| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1734 |
|---|
| Symbol | |
|---|
| ID | 5058193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1988944 |
|---|
| End bp | 1989588 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640474005 |
|---|
| Product | peptidase C60, sortase A and B |
|---|
| Protein accession | YP_001158575 |
|---|
| Protein GI | 145594278 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.841121 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGC CCCGCGCCGC CCGCGCCGCC CGCCGGCCGG CGGGCCGTAG CCCGTGGGTC
GTACCGCTCG CCGTGCTGCT GGTGCTGGTC GGGGTCTTCG CCACGGGTGC CGGGCTGGGC
CGGACCACCG GCCCGCTGGA GTGGGCGAGC GCGGCAGACG TTGACCGGCC CGACGGTGGC
GCCGGGCCGG CACCCACCAC CAGCCGGCCG GTCCGCCTCG CCGTACCCGC GATCGGCGTC
GCCGCGCCGA TCGCGCCGGT GGGGCAGGCC CGGGACGGGT CGATCGCTGT TCCGCCGCTG
GAGCGGGCCC ACGAGACCGG CTGGTACGAC CGGGGACCGG TCCCCGGCGA GCCGGGGCCG
GCGGTCATTG TCGGTCACGT CGACACCAGG GGTGGTCCGT CGGTCTTCGT CGACCTGCAC
CGGCTGCGCC CCGGTGACCC GATCGAGGTG ACCCGTGCCG ACGGCTCGGT CGTGGGGTTC
CGGGTCGACT CGGTGGAGTA CTTCCCCAAG GACCAGCTTC CCGCCGAACG GGTGTACGGC
GATTCCGGGC CGGCCGGGCT GCGCCTGATC ACCTGCGGTG GAGCCTGGGT GGGGGGCCGC
ACCGGTTACG CCGACAACGT CATCGCCTTC GCCACGAGGA CGTGA
|
|---|
| Protein sequence | MTTPRAARAA RRPAGRSPWV VPLAVLLVLV GVFATGAGLG RTTGPLEWAS AADVDRPDGG
AGPAPTTSRP VRLAVPAIGV AAPIAPVGQA RDGSIAVPPL ERAHETGWYD RGPVPGEPGP
AVIVGHVDTR GGPSVFVDLH RLRPGDPIEV TRADGSVVGF RVDSVEYFPK DQLPAERVYG
DSGPAGLRLI TCGGAWVGGR TGYADNVIAF ATRT
|
|---|
| |