| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1331 |
|---|
| Symbol | |
|---|
| ID | 5057784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 1495977 |
|---|
| End bp | 1497572 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640473603 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001158179 |
|---|
| Protein GI | 145593882 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGGC GGAACGGGCT CCCGCGGCGG GTGGATGTCG CCGTCGTCGG CGCCGGGCAC
AACGGGCTGG TGTCGGCGAT CCTGCTGGCC CGAGCCGGGC TGGACGTGCT GGTGCTGGAG
GCGGCCGACG TGGTCGGTGG CGCGGCCCGC ACCGAGACGC CGTTTCCCCG GGTGCCGGAG
CTGCGCCACT CCACCGGGTC CTACCTGCTC GGGCTGATGC CCCCGGAGCT GCTCGCCCGG
CTCGACGTCC GCATCCCGGT GCTGCGGCGC GACCCGCACT ACTTCCTGCC CACCCCGGGC
GGGCCCGGCT CGCCGTACCT GCTTTTCGGC GGTGACGCGA GCGCGACCCG GCGGCAGTTC
GCCGAGTTCT TCTCCCCCGC CGATGTCGCC GCCGACGCCG CGCTCCAGGC CGAGCTGGCC
GCGCTGCGCG CGGACCTCGC GCCGGCCTGG CTGGCCGAAC CGCTACCGGT CGAGGAGACC
GCCGAACGGT ACGTCCGGCC GACGCTGCGC CAGATCTTCG TCGACCTGGT TCGCGGCTCG
GTCGTCGACT ATCTGGCCCG CTTCGACTTC CACTCCGAGC TGCTGGTCAG CATGTACGCG
GTGACCGACG GCCTCTCCGG GGTCAACGCC GGCCCGGACG ACCCCGGCAC CGGGCACAAC
TTCCTGGTCC ACAACATGTG CAGAATTCCC GGCTCCGACG GCACCTGGAT GATCGCCAAG
GGGGGCATGG GCACCGTCTC CCGGACCTTC GCCGACGCCG CGCGCGCCGC CGGCGCGACG
ATCCGCACCG GTACGCCGGT CGGCGCGATC ACCCTCGACG GGGGCGTCGC CTCCGGTGTC
CGGCTCGCCG ATGGGCAGAT CGTCGACGCG TCCGTGGTGC TGGGGGCCTG CGACCCGTAC
CGGCTGATGG AGCTGCTCCC CGCCGGTGCG CTCCCGACGT CGCTTTCCGA CCGGATGACC
GCGGTCCGCC GACCCGGCAC CACGCTCAAG CTCAACCTGG CGCTGACCGG GTTGCCGCGC
TTCTCCTGCC TACCGGCAGA CGCCCCCAGC CCGTTCGGGT CCACCATCCA CCTGCTGCCC
GGCTCCGCCC CCGGGGCTGC CCGCGAGGCG CCGCTGGCAG GGCTGCGCGC GATGTGGGCC
GACGTGCGGG CCGGGCGGCT GCCGCAGGAG CCGACGATCG AGTGGTACCT GCACACCACC
GTCGACCCGA CGCTCTCCGA CGACGCCGGG CACCACTCGT CGGCGCTCTT CGTGCAGTCG
GTGCCGTACG AATTGGCGGG CACCACCTGG GAAGAGGCAC TGCCCGGGTA CGTGGCGCGG
CTGGTGGCGA TCTGCGAACG GTACGCCCCG GGCACCGGGG CCCTGATCGC CGACGCCGTA
CCGCTGGCCC CACCCGGCAT CGAGGCGCAC TTCGGCATCA CCGGCGGGCA CATCCACCAC
GTCGACAACA CCGTGTCGTT CATCGACCGA ATGCCGTACG CCACCGGGAT CGACGGCGTG
TACGCGGGCA GCGCCGGCTG TCATCCGGCC GGCAGTGTCA TCGGCGCGTC CGGCCACAAC
GCCGCCCAGC GCATCCTCAC CGACCTCGGA CGGTGA
|
|---|
| Protein sequence | MDRRNGLPRR VDVAVVGAGH NGLVSAILLA RAGLDVLVLE AADVVGGAAR TETPFPRVPE
LRHSTGSYLL GLMPPELLAR LDVRIPVLRR DPHYFLPTPG GPGSPYLLFG GDASATRRQF
AEFFSPADVA ADAALQAELA ALRADLAPAW LAEPLPVEET AERYVRPTLR QIFVDLVRGS
VVDYLARFDF HSELLVSMYA VTDGLSGVNA GPDDPGTGHN FLVHNMCRIP GSDGTWMIAK
GGMGTVSRTF ADAARAAGAT IRTGTPVGAI TLDGGVASGV RLADGQIVDA SVVLGACDPY
RLMELLPAGA LPTSLSDRMT AVRRPGTTLK LNLALTGLPR FSCLPADAPS PFGSTIHLLP
GSAPGAAREA PLAGLRAMWA DVRAGRLPQE PTIEWYLHTT VDPTLSDDAG HHSSALFVQS
VPYELAGTTW EEALPGYVAR LVAICERYAP GTGALIADAV PLAPPGIEAH FGITGGHIHH
VDNTVSFIDR MPYATGIDGV YAGSAGCHPA GSVIGASGHN AAQRILTDLG R
|
|---|
| |