| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1071 |
|---|
| Symbol | |
|---|
| ID | 5057518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1217468 |
|---|
| End bp | 1218076 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640473338 |
|---|
| Product | regulatory protein, TetR |
|---|
| Protein accession | YP_001157920 |
|---|
| Protein GI | 145593623 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0689162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCGTA CTCGTGATGT CCAGGCCCAG CGGCAACGAC TGTCGGCTGC CACCTGGGCT
GTACTGGCCC AGGATGGTTT GACCGGCCTG ACGGTCCGGG CCGTAGCCGA ACGCGCCGGC
TGCAGTACGG GATTGGTGAT GCACACGTTT CCCGACAAGC TGTCCCTGCT TCGGCACGCA
CGGGACCTGC TGCATGAACG CACCGCTGAG CGCATCGAGC GGGCTGAGGC GGCTGCCGCG
GACCCACGAG ACCGGCTACG AGCCGTGCTG TCGCAGGCGG TCGCCGCCTC TGACGACAAG
AGACAGGAGG CCGGGGTCTG GATCGCGTAC GCGGCGGCCG CAGTCGCCAA CGCCGATCTC
GCCGACCTAC ACCGCAAGCA CAACCGCTCC TTTCTCGCCC GCGTCAACCG GCTCTTGTCC
GAGGCATACC CGGATCTTGC GCAGGACGTG CGAGCAGATG TAGCCACCGC TCTCGTGGCG
CTCGTCGAAG GCATCAACAC CCTCGCCGCG CTCGACCCTG CGACCTATCA CCCCGCTGAG
CAGCGTCGGG CCGTAGAAAG CGCCCTCGTC CGCCTCACCG CACCAGGCAG CATCTCTTCG
GGCGGTTGA
|
|---|
| Protein sequence | MTRTRDVQAQ RQRLSAATWA VLAQDGLTGL TVRAVAERAG CSTGLVMHTF PDKLSLLRHA
RDLLHERTAE RIERAEAAAA DPRDRLRAVL SQAVAASDDK RQEAGVWIAY AAAAVANADL
ADLHRKHNRS FLARVNRLLS EAYPDLAQDV RADVATALVA LVEGINTLAA LDPATYHPAE
QRRAVESALV RLTAPGSISS GG
|
|---|
| |