| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4503 |
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| Symbol | |
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| ID | 5612491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5508547 |
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| End bp | 5511705 |
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| Gene Length | 3159 bp |
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| Protein Length | 1052 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640935480 |
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| Product | type III restriction enzyme, res subunit |
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| Protein accession | YP_001476233 |
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| Protein GI | 157377633 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000814753 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAACAG GTATTTATGA GCAACTAATA ACTAAAGTTA TCAGTAATAA GCTGGATAAA
GATAATTTCT ATTTTTCAGA CCGAAAGATA GATACAACCG AGCAAACTCT TTGGTTAACT
CGTGCATTAG TTCATGTTTT TCATCTCGCA ATATCTGAAT CAAAACATAC AAAAGACTCT
CCATTAGCCC AAATAGAGCT TGCTAATGAG CTGATCTATT GGCTTCAGGA AAAGGTCGAT
AGTTTAGATT TAACAGATTA CACCGTAGCC CAACCGGCAA AACTACTTAC AGCCATCTTT
GATAAACAAG ATCCTGTTGC AGCCAAATTA TCCGCACATA TTGAGAAAAT AACCCCACTT
ACCGGCCTCA CACAAAGCGA GTTATTCTGC GGTAGTAACC AAGGCATTTC ACTAGAAAGT
GAAATTAAGC GTGAAATATT CTCTTCCAAT AGGATCTGTT GGATTGTTTC ATTTATTAAA
TGGACCGGTC TCAGAATTTT CATGGATGAA CTTCGAACTT TTACGAGTAA TAACAAACAT
AAGCTTCAAA TTATTACGAC ATCATATATG GGGGCAACAG ATCTTAAAGC CGTTCAATGG
CTAGCCAAGT TACCTAACAC CGAAGTTAAA TTAAGCTATA ACCATAACCA AGAACGTCTT
CATGCTAAAT CCTATCTATT CATGCGAAAT TCAGGATTTC ATACAGGCTA TATAGGATCA
TCAAACCTCT CACGTTCAGC ACTCACTAAT GGATTAGAGT GGAACTTAAA GATAACCAAT
CAAGAAATCC CACACATCAT TGAGAAAACA TTCAGTACAT TTGAAACATA CTGGCAGCAA
CCTGAATTTG AGATTTTTGA TGGTTCAGAG AAAGCGAGTA GTAAACTAAA GCATTCACTT
AGCGCTGGTC GTGGTGACAA AGATCTTTCA AGTACCGTAT TTTTCGATTT AGCCCCTCAC
CAACATCAAA TTGAAATTTT AGACCGATTA GATGCTGAGC GGAATATTCA TGATCGAAAT
AGGAACCTGA TAGTAGCCGC TACAGGTACG GGGAAAACGC TGATATCAGC TTTCGATTTC
AAACGTTTCT ATCAAAACAA CCCTACAGCA AAAATTCTAT TTATTGCCCA CAGAGAAGAG
ATATTAAAAC AAGCAATCGA AAGTTATAGA GCTGTACTAA AACAGCCTAA TTTTGGCGAG
TTATGGGTCG GACAACATAA ACCAGATTCA TACAATCAAC TTTTTGCATC AATTCAGAGC
TTTAATAATC AAATAGACAA TATAAACCTA AATTCAGATT ATTATGATTT CATTGTGATT
GATGAAGTTC ATCATGTATC AGCTGATAGT TATCGAAAGT TCATCAACCA TTTTTCCCCT
ACGATTTTAC TCGGACTCAC CGCTACTCCC GAACGTCATG ACGGCAAAAG TATATTGGAT
GATTTTGGTG GTGTGATCGC TGCAGAACTC AGGTTACCTG AAGCAATAAA TCTAAGACAT
TTATGCCCTT TTCAATATTT TGGCATAGAT GATAATACCG ATCTACGGCA GGTTAAGTGG
GAAAACGGCC GCTACAATCC AAGTGAGCTG ACTCAACTCT ATACCCAAAA TGATCAAAGG
CTACAGAAAA TACTTCAAAA TATTGAAGAG CTTGTAACTA AGCCTTTAGA AATGCGCGCA
TTGGCTTTTT GTGTCAACCA AGATCATGCT CGATATATGG CTAAAAAGTT TTGCCTCAAA
GGAATACCGA GCGCAGTACT TACCAGCAAA AATGCTTCTG AAAGGCATGC AGTAAGACAA
GATCTACAAC TAGGAAATAT TAATATTCTC TGTGTTGTCG ATATATTCAA TGAAGGCGTC
GATATTCCAG AAATAGATAC CCTACTCTTC TTACGGCCAA CAGAAAGCTT AACAATATTT
TTGCAGCAGC TAGGGCGTGG CTTACGCCAT AACGATGGCA AAGAATGTGT CACTGTGTTG
GATTTTGTCG GTAATGCTAG AGCCGAATAT GACTTTTCAC AGAAGTTCAG AGCCCTAATA
GGAAAGACAC ATACCGCCAT AAGCAAAGAA ATAGAGCACG GCTTTCCGCA CCTTCCACTT
GGCTGCCACA TTGAACTACA GAAAAAAACC AAAGAGATAA TCTTAGAAAA CATTAGGAAA
GCAACATTAA ATCAGCAAAG ATTAAAATCA TATATTCAAA ATTTTCAACA TCATACAAAT
CAAAAACTGA CGTTGAGTAA TTTTTTAAAG TTTAATCCTA ACATTCAGCT TAATGATATT
TATAAGAAAA AGCCTAAAGA TGGTGGAGGG TGGACTCGTT TGTTAAGCGA TCTAAAATTA
ATAGACAAAG TAAACGAAAC CCCAATCGCA GAAAATTATC ACAAAGCCAT TAGCAACAGC
TTAATGAGCT GTGATGCTAG AACTTACCTA ATTTTCATTC GTTCACTAGC AATAAATAAC
TTTAAGTGGA TCGATAATGA CAATCCAATA GAGCAGAAAA TGGCTTTGAT GTGCCACTAT
GATTTTTGGA ATTGTGCAGG AGATAAACTA GGTTATAAAT CTTTATCTGA AAGCTTAGCA
GCACTTTTTC ATCCTGAATA TCAAAAAGAG TTAATACAAG TTATTAACTA CTTACTTGAT
AATAACGATA CGAAAATTCA AAATCTTGAA GCTGACTTTC CTTGCCCAAT TCAACTTAAT
GCACGCTATA CCCGAGAACA AATTATTACA GGATTAGGTG GGGCTAGCTT CGAAAAACAA
GCTATAAGCC GTGAAGGTTA CTTCAACCTA AAAGATCTCA ATGTTGAACT GCTCTTTGTT
ACGTTACAAA AGTCGGATCA ACATTTTTCA CCAACAACGC TTTATCACGA TTATGCAATG
AGCCCTACTC ACTTCCATTG GCAGACCCAG AACTCAGCAA GACCAGATAA AGGCAAAGGG
CTGGGCTATA TTCAGCATAA AAAAATTGGT AAAAAACTCA TGCTCTGGGT ACGAGAGTCC
AATAAGGACG AGAATGGAAA TACTATGGGG TTTGTAAACT TAGGTTGGGT GAACTTGGCA
GAAACTAGCG GCTCCCAACC TATGAATATA ACTTGGGAGT TGCATGAACC TATGCCCAGT
TACCTATGGA AAGATGCAGC AAAATTGGCA AACAGTTAA
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| Protein sequence | MQTGIYEQLI TKVISNKLDK DNFYFSDRKI DTTEQTLWLT RALVHVFHLA ISESKHTKDS
PLAQIELANE LIYWLQEKVD SLDLTDYTVA QPAKLLTAIF DKQDPVAAKL SAHIEKITPL
TGLTQSELFC GSNQGISLES EIKREIFSSN RICWIVSFIK WTGLRIFMDE LRTFTSNNKH
KLQIITTSYM GATDLKAVQW LAKLPNTEVK LSYNHNQERL HAKSYLFMRN SGFHTGYIGS
SNLSRSALTN GLEWNLKITN QEIPHIIEKT FSTFETYWQQ PEFEIFDGSE KASSKLKHSL
SAGRGDKDLS STVFFDLAPH QHQIEILDRL DAERNIHDRN RNLIVAATGT GKTLISAFDF
KRFYQNNPTA KILFIAHREE ILKQAIESYR AVLKQPNFGE LWVGQHKPDS YNQLFASIQS
FNNQIDNINL NSDYYDFIVI DEVHHVSADS YRKFINHFSP TILLGLTATP ERHDGKSILD
DFGGVIAAEL RLPEAINLRH LCPFQYFGID DNTDLRQVKW ENGRYNPSEL TQLYTQNDQR
LQKILQNIEE LVTKPLEMRA LAFCVNQDHA RYMAKKFCLK GIPSAVLTSK NASERHAVRQ
DLQLGNINIL CVVDIFNEGV DIPEIDTLLF LRPTESLTIF LQQLGRGLRH NDGKECVTVL
DFVGNARAEY DFSQKFRALI GKTHTAISKE IEHGFPHLPL GCHIELQKKT KEIILENIRK
ATLNQQRLKS YIQNFQHHTN QKLTLSNFLK FNPNIQLNDI YKKKPKDGGG WTRLLSDLKL
IDKVNETPIA ENYHKAISNS LMSCDARTYL IFIRSLAINN FKWIDNDNPI EQKMALMCHY
DFWNCAGDKL GYKSLSESLA ALFHPEYQKE LIQVINYLLD NNDTKIQNLE ADFPCPIQLN
ARYTREQIIT GLGGASFEKQ AISREGYFNL KDLNVELLFV TLQKSDQHFS PTTLYHDYAM
SPTHFHWQTQ NSARPDKGKG LGYIQHKKIG KKLMLWVRES NKDENGNTMG FVNLGWVNLA
ETSGSQPMNI TWELHEPMPS YLWKDAAKLA NS
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