| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4386 |
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| Symbol | |
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| ID | 5610820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5369061 |
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| End bp | 5370284 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935356 |
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| Product | sodium/glutamate symporter |
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| Protein accession | YP_001476116 |
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| Protein GI | 157377516 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0786] Na+/glutamate symporter |
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| TIGRFAM ID | [TIGR00210] sodium--glutamate symport carrier (gltS) |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00492063 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATACAG TTTATTCAAT AGGTGAACTA GAGTCGTTCT TAGTGGCTAT TTTGGTGCTT
TTCATTGGCC ATTTTGTCAA TCGTCACGTT GCCTCATTCA GGAAATATAA TATTCCTGAA
CCTATCGTCG GTGGCCTGAT TGTCGCCGCG ATCATCACAA TTCTGCACTT TAACAATGTT
GCATTGGAAT TTACTCTGTC GATGCAAAAC ACCCTGATGC TGATGTTTTT CAGTACGGTT
GGTTTAGCGG CAAGTTATAA GTTATTGCTC AAGGGAGGCA GTAAGGTCTT TATCTTCTTA
GGTATCGCTT CTCTCTATAT CGTGATCCAA AATGCCGTGG GTGTCAGTTT AGCTACGACG
CTGGGATTAG AACCTCTGAT GGGGTTAATT GCCGGTTCTA TCACCCTGTC TGGTGGTCAT
GGAACGGGGG CTGCGTGGGC ACAAACCTTT TCAGACACCT ACGGCATCAA CACCCTCGAG
TTCGCCATGG CTGCGGCTAC ATTTGGCCTG GTCATGGGCG GGATAATCGG TGGTCCGGTA
GCACAGAGGT TGATCAATAA AAATGATCTG CTCTCTTCAT ATGGCGTAGG CGGTAATCAC
CATAAAGATC ACCCAGATCT TCTCACCTAC GATCAGTTAG AAGAGGACAG GGTGACGGCT
AAGAGTATCC TCGAGGTACT CTTCCTGCTG CTTCTGTGTG TAGCGGGTGC TAAATGGATC
GGTTCGCTGG TTTCTACTAT GGATATTGGC TGGCTGAAAA TGCCAGACTT TGTCTATGCA
CTGTTTTTAG GTGTGGTGAT CACCAATATC ACTGAGTTAT CCCGTGGTTA TAAGATAAAC
AGTGAGAGTG TCGACGTTCT GGGTACGGTA TCTTTATCTC TGTTTTTGGC TATGGCACTG
ATGAACCTGA AACTTTGGGA AATATTCGAT CTTGCCGTGC CTTTATTGAT AATCCTGTTG
GTGCAAACCA TCACCTTAGC GTTCTTTGCT TATTTTGTGA CGTTCCGACT GATGGGAAGT
AACTATGATG CCGCCGTGAT GGCTGGTGGT CATTGCGGCT TTGGTATGGG GGCAACACCT
ACGGCCGTAA TGAATATGGG TGCACTCGTT TCGAGAACGG GGCCGTCGCC GCAGGCCTTC
ATGGTCGTAC CAATCGTCGG GGCTTTCTTC ATCGATATTG TGAATGCGAT TATCCTGCAG
GGCTACTTAA GTTTTATCGG ATAA
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| Protein sequence | MNTVYSIGEL ESFLVAILVL FIGHFVNRHV ASFRKYNIPE PIVGGLIVAA IITILHFNNV
ALEFTLSMQN TLMLMFFSTV GLAASYKLLL KGGSKVFIFL GIASLYIVIQ NAVGVSLATT
LGLEPLMGLI AGSITLSGGH GTGAAWAQTF SDTYGINTLE FAMAAATFGL VMGGIIGGPV
AQRLINKNDL LSSYGVGGNH HKDHPDLLTY DQLEEDRVTA KSILEVLFLL LLCVAGAKWI
GSLVSTMDIG WLKMPDFVYA LFLGVVITNI TELSRGYKIN SESVDVLGTV SLSLFLAMAL
MNLKLWEIFD LAVPLLIILL VQTITLAFFA YFVTFRLMGS NYDAAVMAGG HCGFGMGATP
TAVMNMGALV SRTGPSPQAF MVVPIVGAFF IDIVNAIILQ GYLSFIG
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