| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4268 |
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| Symbol | |
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| ID | 5611406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5238158 |
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| End bp | 5238778 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640935228 |
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| Product | pilus assembly protein, PilO |
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| Protein accession | YP_001476000 |
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| Protein GI | 157377400 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3167] Tfp pilus assembly protein PilO |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.449559 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTTG AACTGAGTCA GTTTAACGAC ATCGATTTTG AAAATATTGG AGGTTGGCCT
CCATTCGTTA AAATTGTTTT TGCTGCTATA TTGTCAATAT GTATCTTTAT TGCCAGCTAT
TTTTTGTTTG TTTCTGATGC GATAGATACG TTAAGTTTCG AGCAAGAGAC AGAAGTAAAA
TTAAGAGATG ATTTTAAGTC TAAATACCGA CTCGCGGCTA ACCTTAAACT CTACCGTGAA
CAGTTAGCCG CAATGGAATC TCAGTTTGCA GAATTACTTA AGATGCTGCC ATCTAAGAAT
GAAATGCCGG GTTTACTCGA TGATTTAACC TTTGTAGCGA CAGACTCCGG GTTAAAGATT
GAGAGTTTGG ATTGGCGAGA AGTGATCCAA AGAGATTTCT ATTTCGAATT TCCAATTAGC
ATGACTGTAA GTGGTGAATA CCATGAACTC GGTGAGTTGG TCAGCGGTGT GGCTAAGTTG
CCGCGGATTG TGAGTCTACA TGACTTCGTT ATTAAGAAAT CAGATTCCGG TGGCTTAGGA
ATGGAAATAT TGGCAAAAAC ATATCGTTTT AAAGAGGGGG CTGATTTACC TGCCGATATG
AAAAAAGCGA AGGGGAAATA A
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| Protein sequence | MNLELSQFND IDFENIGGWP PFVKIVFAAI LSICIFIASY FLFVSDAIDT LSFEQETEVK
LRDDFKSKYR LAANLKLYRE QLAAMESQFA ELLKMLPSKN EMPGLLDDLT FVATDSGLKI
ESLDWREVIQ RDFYFEFPIS MTVSGEYHEL GELVSGVAKL PRIVSLHDFV IKKSDSGGLG
MEILAKTYRF KEGADLPADM KKAKGK
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