| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4236 |
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| Symbol | |
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| ID | 5614027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5201290 |
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| End bp | 5202189 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935195 |
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| Product | putative permease |
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| Protein accession | YP_001475968 |
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| Protein GI | 157377368 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.886971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000487453 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGCTGACT TTTCTTGGCT CAGCAAATTT CCGAAAATGG ATCGTTCCAC TTTGTTGGAA
ATTCGTAAAT ATTTAGACGG CACCTTTCGG GACTTTTCCC GAGAGTATGG TGATGTCATC
GAGTCTTTCT TCGATCCGCT ACTCGACTTT CTTATCTGGT TTGAAAAGCT ATTGGTGCAA
TCGCCCTGGT GGGCTGTACT GCTCTCGATT ACCGCCTTGG TCTACCTCGC CAGTCGTTCA
TGGAAACTAT CTTTGGGCGT CGTTGTTTCA TTTCTGCTTA TCGGCTATTT CGGCATGTGG
GAAGATACGA TGCGCACCCT CAGTATCATT ACCGTATGTA CGCTATTGGC CATAGTATTG
GGTGTGCCCA TTGGTATATT AATGGCCCGC AGCAATCGAA CCCAGTCGTT GGTGACACCG
ATTCTGGATG TGATGCAAAC CATGCCGGCC TTCGTGTACC TGATCCCCGT GGTCATGTTA
CTTGGAATTG GCAAGGTGCC CGGCGTTATT GCCGTGGTGA TTTATGCCAT TCCGCCTGTC
ATTCGCCTGA CCAACCTGGG GATCCGCCTG GTAGACAAAG AAGTGTTAGA GGCCGCCACC
GCCTATGGTG CTAATCCGAT GCAACGCCTG ATGGGGGTTC AGTTGCCACT GGCCTCTCCT
ACCATCATGG CAGGCATCAA TCAGACCATT ATGATGGCGC TGGGGATGGT CGTTATTGCG
TCTATGATTG GCGTCAAGGG CCTGGGTCAG CCGGTGCTCA AGTCGATCAC CAACCAGTAT
TTCACCCTCG GACTCTTTAA CGGTTTGGCC ATCGTCGCTC TGGCCATCAT TTTTGATCGC
GCCTCTCAAG CCTACGCCAA GCGATCACAG AAACATATGC AGGGTGGACA ACATGACTAA
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| Protein sequence | MADFSWLSKF PKMDRSTLLE IRKYLDGTFR DFSREYGDVI ESFFDPLLDF LIWFEKLLVQ
SPWWAVLLSI TALVYLASRS WKLSLGVVVS FLLIGYFGMW EDTMRTLSII TVCTLLAIVL
GVPIGILMAR SNRTQSLVTP ILDVMQTMPA FVYLIPVVML LGIGKVPGVI AVVIYAIPPV
IRLTNLGIRL VDKEVLEAAT AYGANPMQRL MGVQLPLASP TIMAGINQTI MMALGMVVIA
SMIGVKGLGQ PVLKSITNQY FTLGLFNGLA IVALAIIFDR ASQAYAKRSQ KHMQGGQHD
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