| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4142 |
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| Symbol | |
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| ID | 5612946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5087802 |
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| End bp | 5089220 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935097 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001475874 |
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| Protein GI | 157377274 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00647616 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACACCA GTAAAATTCG GCAACTAAAA CGCAGCGGCT TAGCGTTAGC CGTTAGCGCA
CTGATTATTC CCGCGTCGGC TTACTGCCAG ACATTGGAGC AAGCGGTCGC GCACACCTTG
GATACGAATC CTGAAATTCG TATCGCATTT AATCGCTTTA AAGCTCGTGA AGAGCAGGTT
AGTCAAGCGA TAGCCGGTTA CATGCCAACG GTAGATATCA GTGGAGGATA TGGATATGAG
CAGACAGATA GCCCATCGAC ACGCAGAAAG CCAAATGTAG GTGAAGTCGA TTCTGATGGT
GTTGTTGAGT TGGAACGTGG TGAGGCAGGT TTCAGCATCA AGCAGATGCT GTTCGATGGT
TTCTATACCA GTAGCGAAGT CGACAGATAT AGCTTCGAAG CCAGTGCCGA ACAGTGGGCA
CTCTTCTCCG CTGCCGAAGA TATGGCTCTC GATGTGGCTA AAGTTTATGT TAACTATATC
CGTAGCGAGC AGGTACTGAC GCTGGCAGAA AAAAACCTGG CCAGCCATCA GGAGATATAC
GACCAGATTA AACAGAGAAC CGATTCGGGT TTAGGCTCTG TTGCCGATCT GTCACAAATA
ACGGGTCGTC AGGCTCGTGC CAATTCAAAC CTTATCTCGG CTAAAAATAA CTTTTTCGAT
GCGAAAGCAC AATTTATCCG CGTGGTAGAA CAGCAACCTG AAAGCTTAAT TGTTCCTGTC
CCCGATGACG ATATGTTGCC TGAAGATCTC AGCACCAGCG TCAAAGTCGC ACAAGAAAAT
CATCCGATTT TAAAATCGGC TGCCAGCGAT ATTGAAGCGG CTAAAAACGA GAAATCTTCG
GCTCAATCCA ACTACTATCC AAAATTCACT TTGGATCTGG AAGGGAACTG GAATAATAAC
TTAGATGGTG AAGAGGGGAT CTCAGGTTCA GGCCTATTCT TAAATGATGT CGGCGGATAC
AGCAATGATC TGGTTGCCAT GGTCAGAGTC AAATATAACC TTTTTGCAGG CGGTAAAGAT
CTCGCTCGCA CGAAAGAAGC CGCATATAAA ATCGGTGAAG CCAAAGAGAT CCGTCAACGC
GCTCATCGTC AAGTCGTTGA GGGTGTTAAC CTAGCCTGGA ACGCCTACGA ACTACTCGAA
CCGCAAAAAA TGTATATTCG TGAGCACGTC ATCGCGGCTA AAGATACACA AGTCGCTTAC
AGCCAACAGT TCAACCTGGG ACAACGAACC CTACTCGATC TATTGGATAC CGAAAACGAA
CTTTTCGAAG CCCGTAAAGA TTACCTTGAA GCCGAGTACG ATAGTATTCT GTCTGAATAC
CGCATTTTGA ATGCTACAGG TCGATTATTG GAATCATTAA GAGTCACTCG CCCGGATGTA
TGGCAAGGTG AGCGTAACTA CGAAGGAGGA GTTAACTAA
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| Protein sequence | MNTSKIRQLK RSGLALAVSA LIIPASAYCQ TLEQAVAHTL DTNPEIRIAF NRFKAREEQV
SQAIAGYMPT VDISGGYGYE QTDSPSTRRK PNVGEVDSDG VVELERGEAG FSIKQMLFDG
FYTSSEVDRY SFEASAEQWA LFSAAEDMAL DVAKVYVNYI RSEQVLTLAE KNLASHQEIY
DQIKQRTDSG LGSVADLSQI TGRQARANSN LISAKNNFFD AKAQFIRVVE QQPESLIVPV
PDDDMLPEDL STSVKVAQEN HPILKSAASD IEAAKNEKSS AQSNYYPKFT LDLEGNWNNN
LDGEEGISGS GLFLNDVGGY SNDLVAMVRV KYNLFAGGKD LARTKEAAYK IGEAKEIRQR
AHRQVVEGVN LAWNAYELLE PQKMYIREHV IAAKDTQVAY SQQFNLGQRT LLDLLDTENE
LFEARKDYLE AEYDSILSEY RILNATGRLL ESLRVTRPDV WQGERNYEGG VN
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