| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4137 |
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| Symbol | |
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| ID | 5613193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5056631 |
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| End bp | 5061430 |
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| Gene Length | 4800 bp |
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| Protein Length | 1599 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935092 |
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| Product | putative outer membrane adhesin like proteiin |
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| Protein accession | YP_001475869 |
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| Protein GI | 157377269 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01965] VCBS repeat
[TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTGTTT CAATAGCTAA ACAAGATGCC GTTGTCACTA ACTTGGTTGG TCAATTAAAA
GCCAAAGATG AACAGGGAAA TGTCAGAGAT GTAACGATAG GCGATCTTAT CAAAAACGGT
GAGCAACTAA TCTTCTCGCC AAATGCACAA TTTATTCTGG AGATGGCCGA CGGCTCGGTC
GTCGATGAAA CAAACATCGT ATCGGAAGAG CCAAGCTTAT CTCCTACTCC TGAGGAGGGG
CTAGCTACGG CGCCCGTGTC TACCGATGCG GAAATTGCAG CCCTGCAAGC TCAAATTTTA
GCGGGTGAAG ATCCAACAGC CGGACTGCCT GAGACCGCGG CTGGCACCGC AGCCGGAGCC
GGTGGTAACG AAGGCACCGA CTTTATCACC TTAGACAGAA CTGCTGATGA AACGATAGCC
GGTAGTGGAT ATGATACCAG TGGGTTCGAT CTGGCTGCAG CACCCGCTAT TGACGAGCTA
ATCATTGCTG AAGAAAATAT TCTTCCTACA TTAACTTCCA GCTCCATCAC TCTTTCAGAA
GCAAATCTCC CCCAGGGCTC CTCTCCATTA GCAAGTGCTT TATCACAAGC AAACACAATT
ACACTTGCCG CCCCCAATGA AATATCCCTC TTAGTGATAA ATGGCGTTGA AGTATTTACC
GGTGGCGTAT TTGCCGGACC CGTAGCGATA ACGTCTGCAA GCGGAACATT GAATATAACG
GGGTTTGATG CTGCAACCGG CATTCTGAGT TATAGCTACA CCTTGAACTC AGCAGCCGAT
CATAGCACTG CAGATCTTCA AGCAGATACC TTCGCCGTGT CGCTTACCGA TATTCTGGGC
AACAATACCA CCTCAACTAT TACCGCAAAC CTGCTCGATG ATGCCCCTAG CGGACAAGAT
GACTTAGAGA ACATAGGAGA GGATGACGTT TCAGTTTCAG GAAGTGTCAT CATTAACGAC
ACTCAAGGTG CCGACTCATC TACCGTTTCA CAAATCACTA ACTCAGATGG AGCCAGCTTA
GCTATAGCTC AGGCAGCGAA TATTAGCGGC AGCTTCGGGT CATTACAAAT ATCTGCCGAC
GGTAGCTATA GCTATCTGTT ATCGACTCAG CTCGATGCGG TTCAATCTCT CGCTCAGGGG
GAGCAGGTTA CAGATATATT TACTTACCAA CTCACAGACA GTGATGGTGA TAGCGTGCCG
GTAACGCTTA CGCTCACCAT AACCGGCACC AACGACACCC CTGTCATTAC TACAGAAATA
GGTGATGGAG CCGATCAAGG CACTGTCATC GAATCAGGAA ATGAGGATGA CGGCACCATA
GTTCCCGGAG TGCCACAAAC AACGGGCACC CTCACCGCGA CCGATATAGA TAACGGTGCG
GTATTGAGCT GGAGCGGTAG CGCAACAGGA ACCTTCGGCA GCTTTGTCAT CGATGCCGTA
AGTGGACAAT GGTCATACAC CTTAGATAAC CTGCTTGTCG ATAATTTTGC CGAAAATAGC
TTATCTCAAG AGGAGTTCCT GGTTACCGTG ACCGATGAGT TTGGTGCAAC AGCCACACAA
CTGGTGACCA TCACCATCAA CGGTACCAAT GACAGCCCAA TTATCACCTC ATCGGCTGCC
GATGCCACAG GTAGCGTCAA CGAACAGCCC GCTGAAGGGG TTGTGCTCGA TCCAGACACT
CAAACAGCCA CCGGAACACT CACCGCCAGT GATGTAGATA CCGGGGCAGT CCTGTCCTGG
AGCGGCGATG CCGACTCACT CTATGGCAGC TTTAGCATAG ATCCGATGAC CGGGAAGTGG
ACCTATACCT TAGATAACCA AGCAGCAGAG ATCTTGGCCG AAGGTGAAGT GGTACAGGAA
AACTTTTTAG TCACTGTTAT CGATGAATTT GGCGCCACCG ACACTCAGAC AGTCACTATC
AATATTACCG GTAAGGATGA AGCCTCCGTC ATCGCTAATG ACAGTAACAC CATAGATGAA
GACACGGTCG CTTTAGGCAA CGTGCTGGAT AATGACAGTG ATGAGGACGA CCTGCTAACC
GTCAACAGCT TTACCGTAGA GGGCAGTAGT TACAGCGCAG GAACCAGTGT CGATTTAGCA
AATGGCACCT TAGTTCTTAA CGAAGATGGT AGCTATGTGT TCACCCCTGA TGCCAACTGG
AACGGCGATG TCCCCATTAT TACCTACACC ACCAATACCG GCGCAACCGC AACCTTGACC
ATAGTTGTCG AGCCAGTCAA TGATGCCCCC GATGCGCTAA ACAACAGTTA TAATCTCAAC
GAAGGTGGTT TCACAAGCGG AAACATCATT ACCGATAACA CCGGAGTCGG TGTCGACAGT
GACATAGATG GCGGCGCACT GAACATCACC CACATTAACG GTATTGCAGT TACATTCATT
AGCGGCACGG CGATTCTTCC AATCGGCGAT GGCACCTTAA CCATCAACCA GAACGGTAGC
TTCACCTATG CCCACAACGG TGAAGAACCC GAACCAACCA GCTTTACCTA CACAATTAAC
GATGGATTGG GAGGAACGGA CACTGCAAGC GTATTCTTCA ATATCAACCC GGTCAACGAT
GGCCCGTTTG CCGAAGATGA CAGCTTCAGT GTCGATGAAG GGGCCCTGCT CGGCGGCAAC
GTCATCACTC ACATCGATAA CAACGATGGC CTGCTGGATA GCGACGGCGG CGATGGTGGC
CCACTGAGTA TCACTCAGGT TAATGGCGCC GATCTGGTAT TTAACCTCGG CTGGAGTCAG
GACATCGTAG TGGGTAACGG TACCTTGCGC ATCAAAGCCG ACGGTACCTT CGAGTATCAA
CATGATGGCA GCGATCCCGA AGAGGTACCG CCTACCTTCC AATACACATT AAGTGATGGT
TCAGGCACAG ATACAGCAGT CGTGACTATC ACCACCAACC CTGTTAACGA TGGGCCTGAA
ATTGTCAGCA TCGATTTAGC AGCTGTATCG GAAGAGGGTT TACTCTATGG GATCAAAGAT
GGTCCGCTAC CGCCAGACGA TACTACGGAT GAAGTCTCTT TTGTCGGTAC ACTCAGTTTC
ACCGATGTCG ACAGCAGCAA CTTCGGTATA TCTATAGATG ACACCAATAT CGGTCAATAC
TATTCTGGAA GCACTGAAAT AATCTGGAGT TGGAGTGGTA ATACTCTTAC TGGTACTGCA
GGCTCAATGA CAGTTATGAC AGTCGTATTT GGCGCTGTCA GTGGTACGGC ACCGGACTTC
AGCGTCAACT ACACCATTAG CCTGTTCGCT CCGGTAAATC ATGATCCCGA AAGCAATATC
GAAGATGTAC TGCCTATAGC CTTTGCCGTA ACGGTTGACG ATCTTAACGG TGGCAGCGCC
GACACCACTC TCACGGTCAA TATCGAAGAT GACTCGCCAG TCGATGAGCT TGACCCACAA
GCTGAACCAT CAATAACCAA TAGCATCGGC CAATACATCA CTGGAGATCT ATTTGCCCCT
GGCGCCGATG GTTTTGGCAA CGTGGTCTTC GACGTCACTG CCGAGGTCAA GGGTAACCTT
CTATATAATG GCTCATTTCT TTCCTATGAC ATGGACGGAA ATACGTTAGT AGCATCGTCA
CCACTTGACG ACACCGTCGT ATTTACCATA ACTGCGGTAC CCGATGGAGA CGGTCAATAT
GACTACAAAC TACTCTTACT GGAAGAGATC CAGCTAAAAA CCGATGTTAC ATTTGAAGTC
AATGATGCAC CCGCTGGTTT CAATGAGACC TATTACGTCG ACAGCGATGG TAAAATATAC
TCTCATGATG GCCAAGTAGT TGAAGAGATC GCTACAATTA CCAGCTCCGA TAGTCTTAAT
TCCAATGAGC ATGGTATCGG CGTTGGCTCA ACTCCCTCTA TTGATACAGG CGAAAAAATT
GTATTCCATT ACGGTGACTT AGGCACGTTA GGCGCAAAAA TAGTCCTCGG AACCGGGGTC
AATGCAACCC GAGATGGTAA CAGTGTATTT AACTACACCG TGACCTACAT AAATGGAGAA
ACGAAAGAGT TCACGGGCGT CGTTCTTGAT GGAACATACG AAATAGAAGC TAAGTTCACC
GATGACAATT TCTACTCAAA TGTAGTATCT ATCGAGATCG AATATGTTAA CGGAGATGAC
TTCCAAGTTG CCGAATCAAC CTCAACAGTA GCCAGCGTTA CGGAGAATCC AATAGATATT
GATTTTACCT ACACAGCAAC CGATGCTGAT GGAGATAGCG TCTTTGACCC CGACGGAGAG
CCAGGTGGTT TCACCGTCGT TGTAGAACCA GATACAGGCA GTGACGATAT CAATATCTTG
GCCGGAACCG ATGCCGAAGA CACTCTTTTA GGTGGAATAG AGAGTGACTA CATCATCGGC
GGCACCGGAG ATGACACGAT ATCTGGTGAT GCAGGAGCCG ATATTCTAAT CGGCAGTGAG
GGCTCTGACA CCATAGACGC CGGTGTAGAT ACAGACCGTG ACGCCATTAT CTGGGAGGTG
GGCTCTGCAG ACGAGAGCAT AGATACCATC TATAACTTCA ACCCGGTCTA CGACGTGCTC
AACCTATCCG ATGTGTTAGT CAATGAAGCA CCTGGCGATC TGGAAGACTT CCTCTCATTT
AACTTTGTAG GCGGCAGCAC AGAGATAGTC TTGGATACAA ATGGAACATC ATCAGCTGGA
GGAGATACAC TAACCATACT ATTAGATGGG GTAGACCTAT CTACCATCTA TGGTCCAACT
CCAACGGAGA TCATCAACGG ACTCCTCGAT GACGATGCAC TGATTGTTGA TGTACCATAA
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| Protein sequence | MGVSIAKQDA VVTNLVGQLK AKDEQGNVRD VTIGDLIKNG EQLIFSPNAQ FILEMADGSV
VDETNIVSEE PSLSPTPEEG LATAPVSTDA EIAALQAQIL AGEDPTAGLP ETAAGTAAGA
GGNEGTDFIT LDRTADETIA GSGYDTSGFD LAAAPAIDEL IIAEENILPT LTSSSITLSE
ANLPQGSSPL ASALSQANTI TLAAPNEISL LVINGVEVFT GGVFAGPVAI TSASGTLNIT
GFDAATGILS YSYTLNSAAD HSTADLQADT FAVSLTDILG NNTTSTITAN LLDDAPSGQD
DLENIGEDDV SVSGSVIIND TQGADSSTVS QITNSDGASL AIAQAANISG SFGSLQISAD
GSYSYLLSTQ LDAVQSLAQG EQVTDIFTYQ LTDSDGDSVP VTLTLTITGT NDTPVITTEI
GDGADQGTVI ESGNEDDGTI VPGVPQTTGT LTATDIDNGA VLSWSGSATG TFGSFVIDAV
SGQWSYTLDN LLVDNFAENS LSQEEFLVTV TDEFGATATQ LVTITINGTN DSPIITSSAA
DATGSVNEQP AEGVVLDPDT QTATGTLTAS DVDTGAVLSW SGDADSLYGS FSIDPMTGKW
TYTLDNQAAE ILAEGEVVQE NFLVTVIDEF GATDTQTVTI NITGKDEASV IANDSNTIDE
DTVALGNVLD NDSDEDDLLT VNSFTVEGSS YSAGTSVDLA NGTLVLNEDG SYVFTPDANW
NGDVPIITYT TNTGATATLT IVVEPVNDAP DALNNSYNLN EGGFTSGNII TDNTGVGVDS
DIDGGALNIT HINGIAVTFI SGTAILPIGD GTLTINQNGS FTYAHNGEEP EPTSFTYTIN
DGLGGTDTAS VFFNINPVND GPFAEDDSFS VDEGALLGGN VITHIDNNDG LLDSDGGDGG
PLSITQVNGA DLVFNLGWSQ DIVVGNGTLR IKADGTFEYQ HDGSDPEEVP PTFQYTLSDG
SGTDTAVVTI TTNPVNDGPE IVSIDLAAVS EEGLLYGIKD GPLPPDDTTD EVSFVGTLSF
TDVDSSNFGI SIDDTNIGQY YSGSTEIIWS WSGNTLTGTA GSMTVMTVVF GAVSGTAPDF
SVNYTISLFA PVNHDPESNI EDVLPIAFAV TVDDLNGGSA DTTLTVNIED DSPVDELDPQ
AEPSITNSIG QYITGDLFAP GADGFGNVVF DVTAEVKGNL LYNGSFLSYD MDGNTLVASS
PLDDTVVFTI TAVPDGDGQY DYKLLLLEEI QLKTDVTFEV NDAPAGFNET YYVDSDGKIY
SHDGQVVEEI ATITSSDSLN SNEHGIGVGS TPSIDTGEKI VFHYGDLGTL GAKIVLGTGV
NATRDGNSVF NYTVTYINGE TKEFTGVVLD GTYEIEAKFT DDNFYSNVVS IEIEYVNGDD
FQVAESTSTV ASVTENPIDI DFTYTATDAD GDSVFDPDGE PGGFTVVVEP DTGSDDINIL
AGTDAEDTLL GGIESDYIIG GTGDDTISGD AGADILIGSE GSDTIDAGVD TDRDAIIWEV
GSADESIDTI YNFNPVYDVL NLSDVLVNEA PGDLEDFLSF NFVGGSTEIV LDTNGTSSAG
GDTLTILLDG VDLSTIYGPT PTEIINGLLD DDALIVDVP
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