| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3961 |
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| Symbol | |
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| ID | 5613115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4840552 |
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| End bp | 4841574 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934915 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001475693 |
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| Protein GI | 157377093 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.042208 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGTGC TAAAACTATG GTCTGAAGAG CTTGAATATC GACGTTCAGC ATTTAGATTT
ACACTCATCG TTATTGCTGT TGCGGCCACT GTTTTCACCC TCTTTAATTG GTCTATCGGC
CTGAAAGCCT ATGCTCTGAT AGAACTACTG CTTGTGATAC TCTCTTTAGG GATATTAAGC
ATTGTTCGAA AGACTCAGTA TCTGCACAAC TGGACGCTAC TATTTCTGTT TGTTTTCTAC
TGTGTCATCT TAGTTGGGAT CTCATTTGCC AGTTTTCGCT CGGGTCTGTT TGCCTGGATT
TTTGTTTTTC CCATCCTCTC CTATCTATTG CTTGGTCGTC GCAACGGTCA AGCTGTCACC
CTTTGTTATG TGTCATTAGG GCTGGGTATA TTAGGCTGGC GTCTGTGGCT AAATGACCCC
AACATACATC TGGTGGCAAT GGCAAACTAT AGCCTATGTG TCGCAGCTAT ATGGGGCGTG
GCACACGTAT ATGAATCTAA ACGGGAAGAG GTGGTGGAGC GACTGCAAAA TATGGCGGCC
AGAGACCCGT TAACCGGGCT CTATAACCGT TTACATCTAG AGTCTGTGTT CGAGCAGATA
ACCCAGAGTG AAAGTAGTCC AGACTCATCC CTGTTTATGT TGCTCATCGA TCTGGATCAT
TTTAAGAGTG TCAACGATAA CTATGGCCAT GAAGTTGGTG ACAAGGTGCT GGTGCGGGTG
GCCGAGCTGA TAAAGCAGAC GATTGGAGAG AATGACTGGG GCTTTCGGGT CGGAGGGGAG
GAGTTCTGTC TGCTGCTGCC CGGTACCAAT CACGCATCAG TCCAAGAGGT CGCGCAAAGA
TTACAGCTAG CAATTGAAGG CTCTGCTGTG AGTGTGGGAG AGCATAAGGT ATCGACGACG
GCGAGTATCG GTATTGCGCA GTGGCCCGAG TCAGGTGAAC TTATGCAGGC GCTCTATCGA
ACTGCCGATC GCCGCCTGTA TAGGGCGAAA GAGCAGGGAA GAAATTGTGT TGTCAGTGAC
TAA
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| Protein sequence | MEVLKLWSEE LEYRRSAFRF TLIVIAVAAT VFTLFNWSIG LKAYALIELL LVILSLGILS
IVRKTQYLHN WTLLFLFVFY CVILVGISFA SFRSGLFAWI FVFPILSYLL LGRRNGQAVT
LCYVSLGLGI LGWRLWLNDP NIHLVAMANY SLCVAAIWGV AHVYESKREE VVERLQNMAA
RDPLTGLYNR LHLESVFEQI TQSESSPDSS LFMLLIDLDH FKSVNDNYGH EVGDKVLVRV
AELIKQTIGE NDWGFRVGGE EFCLLLPGTN HASVQEVAQR LQLAIEGSAV SVGEHKVSTT
ASIGIAQWPE SGELMQALYR TADRRLYRAK EQGRNCVVSD
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