Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3950 |
Symbol | |
ID | 5613861 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4827736 |
End bp | 4828980 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640934904 |
Product | sodium/hydrogen exchanger |
Protein accession | YP_001475682 |
Protein GI | 157377082 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0475] Kef-type K+ transport systems, membrane components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.387419 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCTTTC TATATTTAGT TCTTGTATTG TTGGTGACGA CTCGAATATT TGCCGTGATC GCCAAACGCC TAAAACTACC GCCCATTGTT GGTGAATTGG TGTCGGGGAT AGCGCTTGGT TATTTTCTTT ACCACTTTCA AGACGTGTTT CCACTGCTAT GGGAGGTAAC CCAAGGGGAA GCATTTGAGG CCCTGGCCGA TCTCGGCATG TTTTTCCTGA TGCTATTAGC GGGTGTACGC ATGAGCCCGC TGGACTTTAA GAAAACTTCC AGCTCGGCGC CTGCTGTAGC CTTTGGGGGC ATGCTGGTGC CCATCATCTC CGGTACATTA ATAGGCTTGA TGTTCTTCCC TGAATCCCCC TTTAAGATGG TTCAGAGCTG GTTTTTAGGC ACAGCCTTGG CGATCACAGC AGTACCGGTA ACGATTCGTA TGCTGATGGA GTTTAACAAA CTGGATACGG CAGAGGGTAA AACCATTGTC GCGGCAGCAC TTTGGGACGA TCTGTTAAGC CTGTTTATTC TGGCACTCCT GCTAGCCACC ATAAACAATG GCGGCACTCT ATCTTTTACT CCGGATCTCT GGCTGCCATT GCTGGGCAAA GTGATCCTCT TCTTCGCTAT CACCATACCT GTCGGACACT ACCTGTTCCC ACTTATCGGT AGTCGCCTCA AGGCCACAGA AATTCCTGAC ATCGATTTCA GTATGCTGTT GATCGCCGCA CTGGCATATG CGGTACTCGC AGAGATGCTG GATCTACACT TTATTATCGG CGCCTTTGTC GCGGGCATGT TTTTTCACCC GGCTGTAGTA AAGCAGGAGA TTTATGATCG TGTAGATGAG CAAACCTCCG GTATTACGTC CGGTTTCCTT GCGCCAATTT TTTTCGTGTC GATAGGCTTT CATCTGGACT TAACCGCACT GGCATCGATA CCAGGGTTCG TCACTCTGCT CATCATAGTT GCCTTACTAA GTAAGTTAGT CGGAGCCGGA GTATGTGCAC GGGCCACCGG CCATGATACT CAAGAGTCGC TACGCATAGG AGTGGCAATG AGTGGCCGGG GAGCGGTTGA GATCGTTTTG GCCGGCGTCG CCTTGCGAGC CGGATTATTC AACCATCCAG ACCCTACGCC ATCGATTATC ACCGGATTGT TCTCAGCTAT CGTCATCATG GCGATAGTGA CCAGTATTGT GACACCGCTG ATATTAGCCT TTTTGATCCG CTGGCAGGAG AGGAGTGGAC CATAA
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Protein sequence | MRFLYLVLVL LVTTRIFAVI AKRLKLPPIV GELVSGIALG YFLYHFQDVF PLLWEVTQGE AFEALADLGM FFLMLLAGVR MSPLDFKKTS SSAPAVAFGG MLVPIISGTL IGLMFFPESP FKMVQSWFLG TALAITAVPV TIRMLMEFNK LDTAEGKTIV AAALWDDLLS LFILALLLAT INNGGTLSFT PDLWLPLLGK VILFFAITIP VGHYLFPLIG SRLKATEIPD IDFSMLLIAA LAYAVLAEML DLHFIIGAFV AGMFFHPAVV KQEIYDRVDE QTSGITSGFL APIFFVSIGF HLDLTALASI PGFVTLLIIV ALLSKLVGAG VCARATGHDT QESLRIGVAM SGRGAVEIVL AGVALRAGLF NHPDPTPSII TGLFSAIVIM AIVTSIVTPL ILAFLIRWQE RSGP
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