Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3930 |
Symbol | |
ID | 5612583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4801077 |
End bp | 4802021 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640934884 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001475662 |
Protein GI | 157377062 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAAGC ATTCGATCAT TCCAAAAGCC ATTACCGAGT ATGACCTGCG TCTTCTGCGT ATATTTCGAA CCGTTGTCGA AAATGGAGGC TTCTCGGCAT CCGAAGCCGA GCTGGGTGTC ACGCGCTCGA CCATCAGCGT GCACATGTCT AACCTTGAGA GCCGCATGAA GCTCAAACTC TGCAGCCGCG GACGTGGTGG ATTTGCCTTA ACCGAAGATG GACAGGCCGT CTATCATGCC TGCATAGAGC TGTTTGACTC ACTCAACGAC TTTTCACTCT TGGTCAATGG CTTAGGTAAA GAGCTGAGTG GTGAATTGAT TCTGCTCTGT GCCGATCAGC TCGACAGTAC CATGCAGCAG AAGCTTGCTC AGGTTATCCA GTATCTGCAC ATCAAAGAGC CGCAGCTGCA CCTGATCTTA GACGGTGAAG CCATTCACAA TATCGAGCGA GCCTTATTGC AGGATAAGGC ACATGTCGGC TTGCTACCCA GCTATCAGCA GATCGAAGGC CTGAGCTACC AGACTATCTT CAGTGAACCT ATTTATCTGT GTTGCAGTAG CAATCACCCC TATTTCAAAC TGAACGATGA AGAGATCACT CCCGAGATGT TAGCCCAGTC CCCATCCATA CACCCGGGGA TAGATATCGA CTCTGAGGGG CGTGAGCAGT TGAAGAAACT TAATCTCTCG GCAAAAGCGT ACAAGTTTGA TACCAGAAAG ACCCTGATAC TCTCCGGCTG CTATATCGGC TACCTGCCAC AGAGTTATAT CCAAGCAGAG CTGGAGTCGG AGCAGATGAG GATCATCCAC TCAGACTCGG CCAGTTATCA ATTTAACCTA TCGATGGTGT TTAAGAAGAG CCCGCGGGAA ACCAGCAAAG TAGAGCTACT GAAAGCCGCG TTCGAAGAGG TTTTCCACTT GAAACCAACG GGAAACTCGA GATAG
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Protein sequence | MAKHSIIPKA ITEYDLRLLR IFRTVVENGG FSASEAELGV TRSTISVHMS NLESRMKLKL CSRGRGGFAL TEDGQAVYHA CIELFDSLND FSLLVNGLGK ELSGELILLC ADQLDSTMQQ KLAQVIQYLH IKEPQLHLIL DGEAIHNIER ALLQDKAHVG LLPSYQQIEG LSYQTIFSEP IYLCCSSNHP YFKLNDEEIT PEMLAQSPSI HPGIDIDSEG REQLKKLNLS AKAYKFDTRK TLILSGCYIG YLPQSYIQAE LESEQMRIIH SDSASYQFNL SMVFKKSPRE TSKVELLKAA FEEVFHLKPT GNSR
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