Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3897 |
Symbol | |
ID | 5611282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4766380 |
End bp | 4767657 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640934851 |
Product | aminopeptidase B |
Protein accession | YP_001475629 |
Protein GI | 157377029 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0260] Leucyl aminopeptidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000551018 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.710949 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGAGT TAATGAAAGT AAGCCTTAGT AAAGAGGCTC CAGCTGCTCA CTGGGGTAAA GCCGATGTGA CATTTCAAAA TGATCAGGCG GTTATTCACC TGCAAGGTGG AGATGAGCTA AGACAAGTTC AGAAAGCCGC GCGTAAACTG CGTAGCCAAG GCATCGCTTC ACTTTCATTA GAGGGCGAGT TGTGGGATCT GCATTCTCAG TGGGCTTTTG CTCAAGGGTT CGCCACGGCA AAGTCTAATT CTGATATCCG TTGGACCGGG GATGAGGCAA CACAAGTCGA ACTTAAAAAC AGACTCGACA GTGCCAGCTT TGCCCGACAA TTGATCAATG AAACGCCTGA AAACCTTGCG CCTGTGAAGT TGGCTATACT TGCCGCCCAT TGGTTATCTG AGATAGGCGG AGAGAAGGTG ACTTACCGCA TCATCGAAGG TGCCGAGCTG CTCGAAGAGA AGTGGGTTGG GATCCATGCC GTTGGTCGCG GAAGTGAGCG GGCACCGGCT ATGTTAGAGC TTGATTATAA CCCTTTGGGG GATGATGCTC CGGTATCTGT GGCCTTGGTC GGTAAGGGGA TCACGTTTGA CTCTGGTGGT TATAGCATTA AAGCCTCTGA AGGCATGCTA GGGATGAAAT GCGACATGGG TGGCGCGGCT ACCGTGGCGG CAGCGCTCGG GCTTGCGATG AAGCAAGGCT TGAACAAGCG AGTTAAATTG TTCCTTTGTT GCGCCGAAAA CCTGATCAGT GGTCATGCTT ATAAGTTAGG AGACATCTTA ACTTACAAGA ATGGCGTCTC TGTCGAAGTG GTCAATACTG ACGCTGAGGG ACGTTTGGTA TTAGCCGATG GATTGCAGGC GGCTTCTGAA ACGGGCGCCT CTTTAATTAT CGATGCGGCC ACCTTAACTG GTGCGGCCTT GATGGCAGTG GGAACTAACT ATAACGCTAT CTTCTCGCCA TCAAGCGAAG TGTTGGCGAT GGCGCAAGCC AAAGCGACCG AAGTGGGTGA GCGAGTTTGG CCGCTGCCAC TGGATCCCTG GCATCGTGAG ATGTGTCCAT CGGCCTATGC CGATACCGCT AACAGTCGCC CCATGAAAGG GGGCGGTGCC GGTGGAGCGT CTAATGCAGC GGGCTTCCTT TGGCATTTTG TTACGCCTGA GGCTAACTGG TTGCATATGG ATCTAGCCTC GGCTTTTGCC GATAGCGCCA ATGCATTGTG GGCTGCCGGT GGAACGACAC ACGGTGTGCT GACTATCGCA AATTTACTGC AGGATTAA
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Protein sequence | MTELMKVSLS KEAPAAHWGK ADVTFQNDQA VIHLQGGDEL RQVQKAARKL RSQGIASLSL EGELWDLHSQ WAFAQGFATA KSNSDIRWTG DEATQVELKN RLDSASFARQ LINETPENLA PVKLAILAAH WLSEIGGEKV TYRIIEGAEL LEEKWVGIHA VGRGSERAPA MLELDYNPLG DDAPVSVALV GKGITFDSGG YSIKASEGML GMKCDMGGAA TVAAALGLAM KQGLNKRVKL FLCCAENLIS GHAYKLGDIL TYKNGVSVEV VNTDAEGRLV LADGLQAASE TGASLIIDAA TLTGAALMAV GTNYNAIFSP SSEVLAMAQA KATEVGERVW PLPLDPWHRE MCPSAYADTA NSRPMKGGGA GGASNAAGFL WHFVTPEANW LHMDLASAFA DSANALWAAG GTTHGVLTIA NLLQD
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