| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3880 |
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| Symbol | |
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| ID | 5611041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4735808 |
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| End bp | 4737850 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934834 |
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| Product | Signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein |
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| Protein accession | YP_001475612 |
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| Protein GI | 157377012 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACGGT ATAACTTATC GACTATGCTT TTTGTCTGGC TACTCTTAAG TGTCATGACT
CCGACTGTGA TTTTATCCGG TCTATATCTC AGTTCATTCA AGCAGGCTTT CTTACAACAG
GAGCAGGTAC ATCTATCCCA GTTTGCCGAT AATAAAGTTA AACAGATTGA AGACTATATA
AGCGAACGAA TCGCGGATGT ATTTAGTCTG TCTCAGTCGG CAGAGACGGT AGAAGCCTTC
TCTCAACTCT CCCCTCTATA TCGTCAGGAC GGTAAGCAGA GCCAGAATTA TCATCAACTA
TTAGTCGAAC TAAAGAAGGT ATACCAACAC TACCAAGATG ATGGTTACCT CGACCTGTTA
CTTATCTCTC CCTCTGGTGA ACTCCTATTT TCGTTAGGGA TGAATAACCA TTTGCCGCCA
AGTGAGAATA CTGACTCTGA GACGGTCAGC GGCTTAAATT TTGTTGTAAA GCGAGCTAAG
TACTTTCTTG AGTCCTCCTC ATCGAGCTTT GAGTATTATC CCCCGATTGA GCAGGCGGTG
GCATTTATAG GCTCTCCCGT GTTAGTTCAA GGGCGCCTGA TCGGCATCGT CGTGCTGCAG
GTCGACAGTC AGATAATTCA GAAGGTGACC TTAGAGGTAG GCGGTTCGAG GTCGAGTAGG
GAGGTCGTTG TCGCGGCCAG GCAGGGAGAT TATTTTAGTT ATCAGGTAGA GCTTAAATAT
GATGCGGATT CGATCGTAGG CGAACCCCAA CCTATTTCGG AGTTATCCGA GTCACTCTCC
AAGGCTCTGT CGGGTCGCAG GCATATAGGT GTCGATATTG ATTATCGCGG AGTGGAAGTG
CTTGCGGCTT CTCGTTATAT CCCATCGGTA CAGTGGGGAT TAGTGTTCAA GGAGGACATG
AGTGAAGTCG TTCAGGTTTA CGATCAGATT TTTCAACTGG GGCTGCTGAT CTTGTTTATT
GTACTCATTG GTGTTTTGCT TGTTTCCGGC TTGCTTGGAA GAAAGTTGGC GAACCCATTT
GAGTCTATGA CACAGATGAC CCGCTCTATT GCCTCGGGTG AGACCGATAC CCGAATAAAG
CCCGAAGGTT TCAGGGAGAG TTATGAGTTG GCACTGTGTT TTAACCAGAT GTCTCATGCC
CTCTCTCTGG CCAGAGAGAC GTTAGAGCAG CAGGTCGAAG AGCGTACTTT GGAGCTCACC
GATGAGATTG ATTTGCGGCA GAATAAAGAG GCTGCACTGG CTGAAAGTTA TAAAAAATTA
AATCTGTCGA TGAAAAACTT GCAAGCGATG CAGTCACAGC TCATCGAGTC GGAGAAGATG
GCGGCGCTGG GGGGGCTGGT TGCCGGGTTT GCCCATGAGT TGAATACGCC TATAGGTGTT
GCCATCACGG CATCTTCGCT CCTGCTGAGG GAGTTAACCA TCTTAGAGCA GAGTTACACC
AGTGACGAAC TGACTGAAGC GGTATTTAAA CAGTATCTGG ATGATATTAA ATCGGCGTGT
ACTTTGCTGG AGAAAAATCT TAAGCGTTCC GCCTCATTGG TGAGAGACTT TAAATTAGTG
GCCGTCGAGC AAACAAACCT TCATAAGGAG AAATTTGTAC TTCACGATTT GATAGAATCA
CTACTGACCA GCCTCTCTCC GGAGACAAAA AAATATCCTG TCGAAATAAC CAATAGAGTT
GGTGCGTATA TTGTAGTTAA CTCCTATCCT GGGGATTTCT ATCAAGTGTT TACCAATTTA
ATCCTTAACT CATTAATCCA TGGTTTTTCC GGTCATCAGG GGGGAGAGTT AATTATTGAT
GCATCGATCG CCGAAAACCT CATAACCATA ACGGTTGCAG ATAATGGCAA AGGCATCCCC
CAACAAAATT GCAGCAGTAT ATTCGAGCCA TTTTTCACCA CTAAACGAGG TCAAGGCGGT
AGTGGGTTGG GGCTCAGTAT TGTCTACAAC ATAGTTAAAC AAAAACTTCA TGGTGACATC
AAGGTAAGGT CGACATTAGG GCAAGGAACT GAGTTTATTA TCACTTGCCC GGTCAAACAT
TAA
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| Protein sequence | MRRYNLSTML FVWLLLSVMT PTVILSGLYL SSFKQAFLQQ EQVHLSQFAD NKVKQIEDYI
SERIADVFSL SQSAETVEAF SQLSPLYRQD GKQSQNYHQL LVELKKVYQH YQDDGYLDLL
LISPSGELLF SLGMNNHLPP SENTDSETVS GLNFVVKRAK YFLESSSSSF EYYPPIEQAV
AFIGSPVLVQ GRLIGIVVLQ VDSQIIQKVT LEVGGSRSSR EVVVAARQGD YFSYQVELKY
DADSIVGEPQ PISELSESLS KALSGRRHIG VDIDYRGVEV LAASRYIPSV QWGLVFKEDM
SEVVQVYDQI FQLGLLILFI VLIGVLLVSG LLGRKLANPF ESMTQMTRSI ASGETDTRIK
PEGFRESYEL ALCFNQMSHA LSLARETLEQ QVEERTLELT DEIDLRQNKE AALAESYKKL
NLSMKNLQAM QSQLIESEKM AALGGLVAGF AHELNTPIGV AITASSLLLR ELTILEQSYT
SDELTEAVFK QYLDDIKSAC TLLEKNLKRS ASLVRDFKLV AVEQTNLHKE KFVLHDLIES
LLTSLSPETK KYPVEITNRV GAYIVVNSYP GDFYQVFTNL ILNSLIHGFS GHQGGELIID
ASIAENLITI TVADNGKGIP QQNCSSIFEP FFTTKRGQGG SGLGLSIVYN IVKQKLHGDI
KVRSTLGQGT EFIITCPVKH
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