| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3709 |
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| Symbol | |
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| ID | 5612054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4514616 |
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| End bp | 4515326 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934662 |
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| Product | 3-oxoadipate CoA-transferase |
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| Protein accession | YP_001475441 |
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| Protein GI | 157376841 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2057] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit |
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| TIGRFAM ID | [TIGR02428] 3-oxoacid CoA-transferase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAACT TAACCATGAG CAGTCTATTT ATGAGCAAGA TAAGTCAGCA CAATCATGAA
GATGCATCAG ATAAGATCGG TTGGGATCGT GAGCAGATGG CTCAGAAGGC CGCTCAGGAT
ATTCCCGACG GCGCTTATGT AAACTTAGGC ATAGGGATCC CGGAAAAGGT CGCCCGTTAT
GTTCCCGAGG GGCGTGAGGT GATCTACCAC ACCGAGAATG GCTTGCTTGG CATGGGGCCA
ACGCCAGAAG ATGATGAGAT AGATTTTGAG CTTATCAATG CGGGTAAGAA GCCTGTCAGC
GCAATAGCGG GTGCGGCCTA TTTTCATCAT GCTGACAGTT TTGCCATGAT CCGTGGCAAG
CATATCGATG TTTGTGTGTT GGGTGCGATG CAGGTCTCGG CTAAGGGGGA TCTGGCGAAT
TGGTCGACCG GTGCCGTCGA TGCCATTCCT GCCGTGGGTG GCGCCATGGA TCTGGTCGCC
GGGGTTAAGA CAATTTTTGT TATCACTCAA CATACGACCA AGCAGGGGGA GCCTAAGTTG
ATCGAGCATT GCAGCTACCC GCTGACCGGA CAGGGGGTGG TGAGTCGCAT CTATACCGAT
CTGGCCGTTA TCAAGGTCAC GGAGCGAGGT TTAGAGGTGG TCGAGTTGGC ACCGGGTGTC
GATTTTGACT ATGTGCAGCA GCGCACCGGT TGCGAACTGC TTCGGTCATA A
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| Protein sequence | MSNLTMSSLF MSKISQHNHE DASDKIGWDR EQMAQKAAQD IPDGAYVNLG IGIPEKVARY
VPEGREVIYH TENGLLGMGP TPEDDEIDFE LINAGKKPVS AIAGAAYFHH ADSFAMIRGK
HIDVCVLGAM QVSAKGDLAN WSTGAVDAIP AVGGAMDLVA GVKTIFVITQ HTTKQGEPKL
IEHCSYPLTG QGVVSRIYTD LAVIKVTERG LEVVELAPGV DFDYVQQRTG CELLRS
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