Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3647 |
Symbol | |
ID | 5612923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4443521 |
End bp | 4445563 |
Gene Length | 2043 bp |
Protein Length | 680 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934600 |
Product | alpha/beta fold family hydrolase |
Protein accession | YP_001475379 |
Protein GI | 157376779 |
COG category | [S] Function unknown |
COG ID | [COG3904] Predicted periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.42321 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAAAGG ATAAATTCCC CCTTATTGCA ACGACAATAA TTGCGACCAG TATGCTAAGT GCTTGTGGTG GTTCTGGTTC GAAAACAGAG ACCACAGGAA CTGGTGTCAC CGACCCCATC AAATCCTATA AGCCAATTGA GTGTAAAGCG ATGCTGTCAG CAAGCCAGTT AGCGCTGTTA ACACCGGGCT CTGGCTGTGG CTACCTTAGC GTGCCGGAGA AACACGCCCT ATATGGTCAG CCAGCATCAG AAAAAAACAT TGAAATAGCC GTGATAAAAC TGGCCTCAAC CTCGTCAGAA AAGAAAGCCG ATCCGCTTGT ATACCTGCAA GGTGGTCCTG GCGGAAATGC GAGCGCGAGT ATTGGTCAGG TGGTAACAAG TAACACCTTA ATCAAAAACA GAGATATCTA CCTGGTTGAC CAGCGCGGCA CAGGCTATTC GAAGCCGGCA CTATTTTGCA CTGAGTATAG TGGTGAAGCA GGTACGCCAG AACAGCTACA GGCATGTAAA GCAAGGCTGG AAAAGGCCGG CGTCGATCTT AATGCTTATA ATAGCGTACA GAATGCTCAT GACTTTATTC AGTTGAGAAA AGCCTTATCA ATTCCAGAGT GGAATCTGTA TGGCATCTCT TATGGAACCC GCCTCGCAAC AACCATAATG CGAGAAAATA ATAGTGAAGG CATTCGTAGT GTTATTTTAG ATGGCATGTT CCCGATAGAG GTGAACGGTA TCTCTGATAC GCCTTGGGCA AACTATGAAT CTTTGAATCA AATAGTCAAA AATTGTGACA ACACAGATAG CTGTCCTGCT GATGATCTCA AAGCCGTTAT CGAAGACATT ATTGCCCGTA TGCATAACGA GGGCATGGTG GCTGAGAGTC GCGTATTCAT CCAAAACTTA CTCGAACTGA TCAAAGAGCC TGCGATCATC AACTACCTGT TAGCGGTTAA TGAAGATATC GGTAAATACC GATCGGCCTT AGCATCGTTA ATGGCCGACC AAGACGATGA ACAAGATGGC GGTGGTGAAC GAGCGGGTGA TGAAGAGAGT GATGAAGAGG AGCTATTTTA CGGCGCCATG GGGTTATCTA CCGTCTGCGC CGAAGAGTAC CCGTTTCTTA ACACCACGGC TCTGAGTGAC GATAATAGCC AGGGCTGGTC GGCAAGCACC CAGGTCGCAG TCAATGGCAT GTATCATATG GGCTTCGATA AATCCTCTTG TCAGGCGTGG AATGTTGCGC CAGCCAATGA TGTTGAGACA CAAGCTGTGG CCAGCACTCT GCCGGTGTTA ATACTCAACG GCCAAAACGA TACCCAAACA CCGGCGGCCT GGGGATCGTT GGTGGCTAAA AACATGCTCA ATGCACAAAA CATTACCAAC CCTCAGGGTG AACATGGGCA ACTCATGGCT GGTTTTAGCT GTTTCGATAC CATTGCGGAT GAGTTTTTAG CTGAGCCAAA TAAAACTGTC GATGCAAGCT GTGTATCAGA GATCCCTGCA GTAAGCTATG AAGGCGGAGG TGGCGAGGAG AAATCAGCAA GCTTTACCTT TAAGAACGGT GATACCAGTT CAGATACCGT TTATATGAAT GGCGTTATCG GCTCAGATAC CTTAGATGTG ATGCAGACAC TGCTTAACAG CTACCCGCAA ATTAAGACCA TAGTGATGCA AAACGTGCCG GGATCTATGG ATGATGACAC CAACTTGTTA GCTTCTATGG AGATCAGAAA GCGTGGTATT GCTACACATA TCCCAGCCGA TGGCATGGTA GCATCGGGCG GCACAGATAT GTTCTTAGCC GGGGTTAAAC GCACAGCGGA AGCGGGCGCT AAGCTTGGCG TGCACTCCTG GAGCGATGGC AGTGGCAAAG TAGCACTGGA TTACCCCCGC GATCATCAAA CACATGTTAA GTATCTGGAT TATTATAAAG CCGTAGGGAT AGATACCAGC TTTTACTGGT ACACCCTGGA AGCCGCCCCC GCCGATGGTA TCCACTGGAT GACAGCAGAA GAGATTGCTC AATATGGCGT ACTGACAGAG TAA
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Protein sequence | MIKDKFPLIA TTIIATSMLS ACGGSGSKTE TTGTGVTDPI KSYKPIECKA MLSASQLALL TPGSGCGYLS VPEKHALYGQ PASEKNIEIA VIKLASTSSE KKADPLVYLQ GGPGGNASAS IGQVVTSNTL IKNRDIYLVD QRGTGYSKPA LFCTEYSGEA GTPEQLQACK ARLEKAGVDL NAYNSVQNAH DFIQLRKALS IPEWNLYGIS YGTRLATTIM RENNSEGIRS VILDGMFPIE VNGISDTPWA NYESLNQIVK NCDNTDSCPA DDLKAVIEDI IARMHNEGMV AESRVFIQNL LELIKEPAII NYLLAVNEDI GKYRSALASL MADQDDEQDG GGERAGDEES DEEELFYGAM GLSTVCAEEY PFLNTTALSD DNSQGWSAST QVAVNGMYHM GFDKSSCQAW NVAPANDVET QAVASTLPVL ILNGQNDTQT PAAWGSLVAK NMLNAQNITN PQGEHGQLMA GFSCFDTIAD EFLAEPNKTV DASCVSEIPA VSYEGGGGEE KSASFTFKNG DTSSDTVYMN GVIGSDTLDV MQTLLNSYPQ IKTIVMQNVP GSMDDDTNLL ASMEIRKRGI ATHIPADGMV ASGGTDMFLA GVKRTAEAGA KLGVHSWSDG SGKVALDYPR DHQTHVKYLD YYKAVGIDTS FYWYTLEAAP ADGIHWMTAE EIAQYGVLTE
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