| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3623 |
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| Symbol | |
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| ID | 5612322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4411366 |
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| End bp | 4412250 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934576 |
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| Product | TPR repeat-containing Zn-dependent protease |
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| Protein accession | YP_001475355 |
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| Protein GI | 157376755 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.619094 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.846236 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAT TAACCACATC GATTTTACTC CTGAGCCTTG GTATCGCTTG CAGTGGCTGC
GGGTCGAATC AGAGTTTTGT GTTTAATAAT ATCGATATAG GTAAGGGGCT ATCGGCCCTG
GAGCATACTC AAGATGCCCT GACCGAGGTC GATGAAACTG CCGAAATAGC TCTGGGCCGG
GAGATTGTCA CCAACCTGCT TGGTGTCGCC CCCCTGCTTG AAAACCAGGA GGTGCAGCAA
TATGTTAACC GGGTCGGCCG CTGGGTCAGC ATGCACTCCG AGCGTCCGGA ACTGCCCTGG
AGCTTCGCCG TGCTCGATGA TGATAGCATC AACGCTTTCG CCACCCCCGG TGGCTACATA
GTGCTCACCA AAGGTTTGTT GCTTACTCTC AACAATGAAG CTGAACTAGC CGGAGTACTC
GGCCATGAAA TATCTCATGT GCTGCGAAGA CACCATCTGA ATGCACTGAA AAAAGCCAGT
GGCATGAGTG CATTAACCGA GATAACCGAT CTCATTTTAA CGGCAAAAGA GCAAAGTACT
GAATCACTAA AACTCGTTAC CGCAGGCACA GAACTGTATA CCCGCGGATT AGATAAGGAA
GATGAATTTG AATCCGACCG TATGGGGATA GTGTTAGCCA CCAGAGCAGG CTACGACCCT
TATGGTCTGC CCGCCGCATT ACAGACTCTG GAGATGATAA ATCCCGATGA CGCGGGTCTC
GCCATGCTGT TTAAGACCCA CCCATCACTG GATGAGCGAC TCGGACGATT AGATGCCGCT
ATGGCCAGCG GATTCGATCA GTATGAGCGT TTACCCACAG CCAAAGAGCG ATTTACCCGC
ACTATGGCAG GTATCTCTTC GGGGTTGAGT AAAGTAAAAA GCTAG
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| Protein sequence | MNKLTTSILL LSLGIACSGC GSNQSFVFNN IDIGKGLSAL EHTQDALTEV DETAEIALGR
EIVTNLLGVA PLLENQEVQQ YVNRVGRWVS MHSERPELPW SFAVLDDDSI NAFATPGGYI
VLTKGLLLTL NNEAELAGVL GHEISHVLRR HHLNALKKAS GMSALTEITD LILTAKEQST
ESLKLVTAGT ELYTRGLDKE DEFESDRMGI VLATRAGYDP YGLPAALQTL EMINPDDAGL
AMLFKTHPSL DERLGRLDAA MASGFDQYER LPTAKERFTR TMAGISSGLS KVKS
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