| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3542 |
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| Symbol | |
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| ID | 5611952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4316856 |
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| End bp | 4318547 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934495 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_001475274 |
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| Protein GI | 157376674 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATA CTAACGAATT TGATATCTGC ATCGTAGGCA GTGGCGTCGG TGCCGGTCCT
GTGGCCCATG AACTGGCCAA GGCGGGTTAC AGGGTTGGTG TGCTCGAGAA GGGGAAGTGG
TTTAAAGAAA CGGACTTCTT CAAAGATGAG CAGCTTGGAC GTCATAGGGT ATTTAGATCT
CAATTCAAGG ATGAGCGGCA CACCTTAGAG GAGCCCAACG GTGACGGCAC CTGGTCGAGT
GAGACTACCG CGCAGTTTTG GGGCGGCAAT ATTGTCGGTG GTGCCTCTAA CTTTATGAGT
GGTTACTTTC ATCGACTCAA GCCACAGGAT TTCCGGTTAG TCAGTGAGTT TGGTGAAATA
GAAGGGGCCA ATACCGTCGA CTGGCCAATC GGCTATGACG AGTTAGAGCC CTATTACACT
AAGGTTGAGC AGCTTGTAGG GGTGTCGGGC AAGGTGGTTG AGCATCCTCA CCTGGAGCCG
CGTTCGACCA AAGATTTCCC CTTTCCTCCC ACCGCGGAGC ATCCGGTCGC TCAACGGTTC
GATTTAGCCT GCAGAGCACT TAAACTCCAC CCACTTCCCA TGGCGAGAGG CATCTTGTCG
GTGCCCTTTA ATGGGCGTTT GAGCTGTGAG TATTCCGGCT ATTGTGGCAG TTATGGCTGT
CACTCAGGCG CCAAAGCCAG CTCCCGTGCG GCCTTGTTGG ATAACGCCGT TGCAGGCGGC
AATTGTGAGG TTATCACACA AGCCAAAGTG TATCGGCTCA ATACTGATGA AGCCGGAAGG
GTGAGCTCTG CTGACTACTT CGACAAAGAC GGAGAATCAG TACGGGTCCT GGCCACCATT
TTCGTGGTGG CCTGTTACTC CATTGAGAGC GCACGTTTAT TGTTAAGCAG TACCGGAGTT
AAGCACCCAC AAGGCATAGG AAACAGCAAG GGACAGGTAG GTAAGAACCT GCACTGCTGC
GCGGGTGGAA CGGGTCATGG GGTGTTTAAA CTCGATAAGC TAAAAGAGTT TGAAGCCAGG
CAGCTCAAGA TCCGGGGACC GTTTTATAAT CGCGCCTTGC AGGATTGGTA TGTGATCGAT
GACAGGTCCG TCTCTGACAA GCCGATAAAG GGCGGCACTT TAGATTTTGT GTTCGATCCG
CCATCACCTA CAGCGGAGAC GGCAGGGCTC AAGTGGCAGG GGGATAATCT GCTGTGGGGC
ACGCCCCTAA AGCAGAAGAT TAAGGCGCAC TTTACCCAAT CGAAAGACTT TAAGTTTGAG
GTGTTTTGTG ACTGGCTAAC TAATGACGAG TGTTATGTCA GCTTAGACCC TGATGAGAAA
GACAGGTGGG GCCAGGCTGT CGCGAAGGTG CGCGCAGGGT TTCACCCCCA TGATGAGAAG
GTCGCTCAAT ACCTGGTCGA TCGCGGAGTC GAGGTGATGA AAGCCATGGG CGCAGACGAG
GCCTGGGGCA ATGTGTTTAC CTCACCGACA TCCAACCTGG TCGCCGGAGG CTGCCGTTTC
GGTAATGACC CTGACACCTC GGTGCTGGAC AGAAACTGCC GGGTACACGA CTGCGATAAT
CTCTATGTCA CCGATGGAAG TTTTATGCCT AATGGTGGTT CAGTCACACC GACACTGACT
ATCTATGCCA ACGCGTTTCG GGTTGCGGAC AGGATACTGG AGGAGATGAA GGTGCTAGAA
CCTAGAACCT AG
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| Protein sequence | MKNTNEFDIC IVGSGVGAGP VAHELAKAGY RVGVLEKGKW FKETDFFKDE QLGRHRVFRS
QFKDERHTLE EPNGDGTWSS ETTAQFWGGN IVGGASNFMS GYFHRLKPQD FRLVSEFGEI
EGANTVDWPI GYDELEPYYT KVEQLVGVSG KVVEHPHLEP RSTKDFPFPP TAEHPVAQRF
DLACRALKLH PLPMARGILS VPFNGRLSCE YSGYCGSYGC HSGAKASSRA ALLDNAVAGG
NCEVITQAKV YRLNTDEAGR VSSADYFDKD GESVRVLATI FVVACYSIES ARLLLSSTGV
KHPQGIGNSK GQVGKNLHCC AGGTGHGVFK LDKLKEFEAR QLKIRGPFYN RALQDWYVID
DRSVSDKPIK GGTLDFVFDP PSPTAETAGL KWQGDNLLWG TPLKQKIKAH FTQSKDFKFE
VFCDWLTNDE CYVSLDPDEK DRWGQAVAKV RAGFHPHDEK VAQYLVDRGV EVMKAMGADE
AWGNVFTSPT SNLVAGGCRF GNDPDTSVLD RNCRVHDCDN LYVTDGSFMP NGGSVTPTLT
IYANAFRVAD RILEEMKVLE PRT
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