| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3293 |
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| Symbol | |
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| ID | 5611584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4001551 |
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| End bp | 4002342 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640934231 |
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| Product | amino acid ABC transporter periplasmic protein |
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| Protein accession | YP_001475025 |
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| Protein GI | 157376425 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000280664 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCGCTATA AACATCACTT AATTGCTATA ACTTTACTTT TAATCAGCAA CTTCTCCTTT
GCTAATGATA AAGTAATCAG TGTTGCAACA TTAAGTGATT ACGCTCCTTT CTGTATGGCG
AGTGAAGATA GCAAAAGTAA TCAGTTCATT CCTGTAGGTC AAGATGCTGT AGGGTTTAGC
GGATATAGCT GGGATGTGTT CAGAGCAAGT TTCCATAGGA TGGGCTACTC GATTCAAATA
TCAGTTACAC CATGGGCCAG AGCGCTACAC TCTCTGCAAA GCGGCAAAGT TGATATTCTA
TTCCCGGCAG GAAAGAGCGT AGAGCGACTA AAGGTATTTG ATTACTCAAA GGAGCCCATC
AGCGAGATTA ATTTTGCGCT TTATGTAAAT GCAGACAGCA CAATACAGTG GCAAGGTTTA
GCATCGCTGG AAGGGTTAAC AGTTGGTGTT AAAAGAGCTT TCAACTATGG GGATAGATGG
AACTCAACCA CAGATATAAT CAAATTTGAT GTCAACGGCA GTCAACAAGG ATTTAAAATG
TTAGCGTCAA ACCGGATTGA TGCCCTTCTT GGTTACGAAT ACAGCTGGGA CTATTTTTTA
AAACAAGCAG GTTGGAAACA CAAATATCGA AAGCTCGCCA TCCTCGACTC TACTCATGAG
TACCTGGCAT CTCTCAAGAG TAACCCCAGG CGCAAAACAT TATTCAAAGC CTTTGAACAA
GGCAAAAAAC AGCTCATAGA AAGTGGAGAA CTCGGCAAGC TCAAACAAAA ATGGTTCGGT
AATAATCAAT AA
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| Protein sequence | MRYKHHLIAI TLLLISNFSF ANDKVISVAT LSDYAPFCMA SEDSKSNQFI PVGQDAVGFS
GYSWDVFRAS FHRMGYSIQI SVTPWARALH SLQSGKVDIL FPAGKSVERL KVFDYSKEPI
SEINFALYVN ADSTIQWQGL ASLEGLTVGV KRAFNYGDRW NSTTDIIKFD VNGSQQGFKM
LASNRIDALL GYEYSWDYFL KQAGWKHKYR KLAILDSTHE YLASLKSNPR RKTLFKAFEQ
GKKQLIESGE LGKLKQKWFG NNQ
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