| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3274 |
|---|
| Symbol | |
|---|
| ID | 5613678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3974736 |
|---|
| End bp | 3975599 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640934212 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_001475006 |
|---|
| Protein GI | 157376406 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4922] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.896395 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0865941 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA CCATAGCGAG CGCACTGGTG ATGGCGTTAG TTTCACTGAC AGCGTGTAAC
GATGATTCGA ACTCAAATGA GGAAAGTATG ACGCTATCTA ATAAAGACAA GGCCGTTGCG
GTACTCAACA GCATAGAAAC CGGCGATGAG CAGGCGATCT CATATATCAA CCCACTCGAA
TACACCCAAC ATAACCTCTC TGTCGGCGAT GGCCTGGCAG GATTTGGCGC CGTACTACAG
GCGTTACCCG AAGGCAGCGC CAGGGTCGAT GTGGTCCGCG CATTCGAAGA TGGGGAGTTC
GTTTTTACCC ATACCGATTA TAACTTCTTC GGCCCCAAGA TTGGTTTCGA CCTGTTCCGT
TTCGAAGACG GCGTCATTGT CGAGCACTGG GATAATCTCA TCGCTACATC AGACCTCCCC
AACCCGAGCG GCCATAGCCA GATAGATGGC TCAACGACGG TAACCGACTT AGATAAAACG
GCAGAAAATA AGGCCTTGGT AACCGATTTT GTCGATACCA TACTGGTAAA AGGTGAGTTC
GATAAACTGG CCAACTACTT CGATGGCGAC AACTACCTGC AACATAACCC TCAAATCGGT
GATGGTGTGT CGGGCCTGGG CGCCGCCCTC GAAGCCATGG CCCAACAAGG GATAGAGATG
ATCTATACCA AGAACTATAA GGTACTGGGA GAAGGTAACT TCGTATTGAG TATCAGCGAG
GGTACATTGG GCGGTGCAGA GACCTCATTT TACGACCTGT TTCGTATCGA AAATGGCAAA
GTTGCCGAAC ACTGGGATGT CATCGAAACT ATCGCCCCTA TTTCAGAGTG GAAGAACAAC
AACGGTAAGT TCGGCGGTCT TTAA
|
|---|
| Protein sequence | MKKTIASALV MALVSLTACN DDSNSNEESM TLSNKDKAVA VLNSIETGDE QAISYINPLE
YTQHNLSVGD GLAGFGAVLQ ALPEGSARVD VVRAFEDGEF VFTHTDYNFF GPKIGFDLFR
FEDGVIVEHW DNLIATSDLP NPSGHSQIDG STTVTDLDKT AENKALVTDF VDTILVKGEF
DKLANYFDGD NYLQHNPQIG DGVSGLGAAL EAMAQQGIEM IYTKNYKVLG EGNFVLSISE
GTLGGAETSF YDLFRIENGK VAEHWDVIET IAPISEWKNN NGKFGGL
|
|---|
| |