Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3241 |
Symbol | |
ID | 5613112 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3934167 |
End bp | 3934601 |
Gene Length | 435 bp |
Protein Length | 144 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934179 |
Product | hypothetical protein |
Protein accession | YP_001474973 |
Protein GI | 157376373 |
COG category | [S] Function unknown |
COG ID | [COG2128] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.371033 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTAAAC GTATCGATCT GGCTAAAACA CAACCTGCTG CACTTACCGC CATGCTTAGT GTTGAAAATT ACCTTTCACA AACGGCACTT CCCGCTAAGT TGAAAGAGCT GATTAAGATA CGTGCATCTA TGATTAACCA GTGCGCTTAC TGTATCGAGA TGCATACCGC CGAAGCACTA AAAGCCGGGA TTGAACAGCA AAAGCTGTTC GCCATATCAG CCTGGAGAGA GTCCCCGTTA TTCGATGACA AAGAGCGTGC GGTATTAGCA TTGACCGATG AGATGACCTT GATTGCCGAC TCAGGGGTAT CCGATACAGC TTATCAGGCA ACTCTGGAGA AGTTAGGAGA GGAGCAGCTC GCAGAGGCCA TGATGCAAAT AATTATGATC AACGCCTGGA ATCGTTTTGC CTTGGCAACA CAGATGAAAC ACTGA
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Protein sequence | MTKRIDLAKT QPAALTAMLS VENYLSQTAL PAKLKELIKI RASMINQCAY CIEMHTAEAL KAGIEQQKLF AISAWRESPL FDDKERAVLA LTDEMTLIAD SGVSDTAYQA TLEKLGEEQL AEAMMQIIMI NAWNRFALAT QMKH
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