Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3228 |
Symbol | |
ID | 5613764 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3918953 |
End bp | 3920089 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934166 |
Product | crotonobetainyl-CoA dehydrogenase |
Protein accession | YP_001474960 |
Protein GI | 157376360 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTTA AATTAAGCGA CGAGCAAGAG TTATTCGTTT CTGGTATTCG CGATTTGATG GCGAAGGAGA ACTGGGAAAA CTATTTTGCA GAGTGTGATG AAAATAGTCA GTACCCGGAG AGATTCGTCA AAGAGCTAGC CGAGATGGGA ATTGATAGCC TTTTGCTTCC TGAAGAGCAC GGTGGATTCG ACGCCGGAAT GGTTACCCTT GCCGTTATCT GGGAAGAGCT TGGCCGTTTA GGTGCACCGA CTTATGTCTT GTATCAGTTA CCTGGCATCA CAACGATTCT GAAACACGGT AACCAAGACC AAATCCAAAA GATCATGGAA CTACGTGGTA CCGGTAAGCA GATGTGGAAC TCGGCTATCA CTGAGCCAAG CGCAGGTTCT GACGTGGGTA GCTTGCTAAC CACTTATAAG AGAAAGAACG GCAAAGTTTA TCTTACCGGT AGCAAGTGCT TTATCACCAG TGCGGCGGGT ACGCCTTACA TCGTGGTTAT GGCTAAAGAT GCAGATTCAG AGAAGCCAAT CTTTACCGAG TGGTTTGTGG ATATGTCAAA GCCGGGTATC AAGTTAGGCA AGTTACCTAA GCTTGGTTTG AAGATGGACA GCTGCTGCGA GCTTCAGTTC GATGAACTTG AGCTGGAAGA GTCGGACATG TTTGGTGAAG AGGGCAATGG CTTCTTACGT GTTAAGGAGG AGTTTGACTC AGAACGTTTC CTTGTTGCAC TGACCAACTA TGGCGCTGCT TACTGCGCAT TCGAAGATGC GGCTAAGTAT GCTAACCAGA GGGTTCAATT CGGTGAGGCT ATCGGTCGCT ACCAGCTTAT CCAGGATAAG TTTGCTCATA TGGCTATCAA GCTTAACAGC ATGAAAAACA TGGTTTATGA AGCAGCCTGG AAGTGTGACC AAGGCACGAT GACATCTGGT GACTCTGCAA TGTGCAAATA CTTTTGTGCG AATGCCGGTT TCGAAGTTAT CGATTCTGCG ATGCAGGTTC TGGGTGGCTA TGCTATCGCT GGCGAACATC GTATCAGCCG TATGTGGCGT GACATTCGCG TCGACAGAGT GTCAGGCGGT TCAGATGAGA TGCAAATTCT GACCCTTGGT CGTTCTGTAC TTAAGCAATA CAGATAA
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Protein sequence | MDFKLSDEQE LFVSGIRDLM AKENWENYFA ECDENSQYPE RFVKELAEMG IDSLLLPEEH GGFDAGMVTL AVIWEELGRL GAPTYVLYQL PGITTILKHG NQDQIQKIME LRGTGKQMWN SAITEPSAGS DVGSLLTTYK RKNGKVYLTG SKCFITSAAG TPYIVVMAKD ADSEKPIFTE WFVDMSKPGI KLGKLPKLGL KMDSCCELQF DELELEESDM FGEEGNGFLR VKEEFDSERF LVALTNYGAA YCAFEDAAKY ANQRVQFGEA IGRYQLIQDK FAHMAIKLNS MKNMVYEAAW KCDQGTMTSG DSAMCKYFCA NAGFEVIDSA MQVLGGYAIA GEHRISRMWR DIRVDRVSGG SDEMQILTLG RSVLKQYR
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