More than 300 homologs were found in PanDaTox collection
for query gene Ssed_3228 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_00043  crotonobetaine reductase subunit II, FAD-binding  80.53 
 
 
380 aa  649    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3560  acyl-CoA dehydrogenase domain protein  80.53 
 
 
380 aa  649    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3616  crotonobetainyl-CoA dehydrogenase  80.53 
 
 
380 aa  649    Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0669979 
 
 
-
 
NC_011080  SNSL254_A0077  crotonobetainyl-CoA dehydrogenase  79.47 
 
 
380 aa  639    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.214032  normal 
 
 
-
 
NC_009831  Ssed_3228  crotonobetainyl-CoA dehydrogenase  100 
 
 
378 aa  786    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0079  crotonobetainyl-CoA dehydrogenase  79.47 
 
 
380 aa  639    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0999313  normal 
 
 
-
 
NC_009901  Spea_4037  crotonobetainyl-CoA dehydrogenase  93.12 
 
 
378 aa  742    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0043  crotonobetainyl-CoA dehydrogenase  80.53 
 
 
380 aa  649    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0570  crotonobetainyl-CoA dehydrogenase  79.1 
 
 
377 aa  642    Desulfotomaculum reducens MI-1  Bacteria  normal  0.741044  n/a   
 
 
-
 
NC_011094  SeSA_A0081  crotonobetainyl-CoA dehydrogenase  79.47 
 
 
380 aa  639    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.124381  normal 
 
 
-
 
NC_009801  EcE24377A_0041  crotonobetainyl-CoA dehydrogenase  80.53 
 
 
380 aa  649    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0077  crotonobetainyl-CoA dehydrogenase  79.47 
 
 
380 aa  639    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B0080  crotonobetainyl-CoA dehydrogenase  79.47 
 
 
380 aa  639    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2675  crotonobetainyl-CoA dehydrogenase  94.18 
 
 
378 aa  753    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_0040  crotonobetainyl-CoA dehydrogenase  80.53 
 
 
380 aa  649    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_0043  crotonobetainyl-CoA dehydrogenase  80.53 
 
 
380 aa  649    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_00042  hypothetical protein  80.53 
 
 
380 aa  649    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1834  crotonobetainyl-CoA dehydrogenase  58.38 
 
 
383 aa  475  1e-133  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1403  putative acyl-CoA dehydrogenase  46.44 
 
 
381 aa  363  2e-99  Dickeya dadantii Ech703  Bacteria  normal  0.186623  n/a   
 
 
-
 
NC_010658  SbBS512_E1898  putative acyl-CoA dehydrogenase  46.72 
 
 
383 aa  357  9.999999999999999e-98  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01664  predicted acyl-CoA dehydrogenase  46.72 
 
 
383 aa  357  1.9999999999999998e-97  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1947  acyl-CoA dehydrogenase domain protein  46.72 
 
 
383 aa  357  1.9999999999999998e-97  Escherichia coli DH1  Bacteria  normal  0.0267578  n/a   
 
 
-
 
NC_010468  EcolC_1936  putative acyl-CoA dehydrogenase  46.72 
 
 
383 aa  357  1.9999999999999998e-97  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0137614 
 
 
-
 
NC_012892  B21_01653  hypothetical protein  46.72 
 
 
383 aa  357  1.9999999999999998e-97  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_2411  putative acyl-CoA dehydrogenase  46.72 
 
 
383 aa  357  1.9999999999999998e-97  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A1777  putative acyl-CoA dehydrogenase  46.72 
 
 
383 aa  357  1.9999999999999998e-97  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1501  putative acyl-CoA dehydrogenase  46.72 
 
 
384 aa  357  1.9999999999999998e-97  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.0210737 
 
 
-
 
NC_009801  EcE24377A_1911  putative acyl-CoA dehydrogenase  46.72 
 
 
383 aa  357  1.9999999999999998e-97  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1452  putative acyl-CoA dehydrogenase  45.67 
 
 
383 aa  348  6e-95  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.215854  normal  0.288661 
 
 
-
 
NC_011080  SNSL254_A1468  putative acyl-CoA dehydrogenase  45.67 
 
 
383 aa  348  6e-95  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.283366  normal  0.0792636 
 
 
-
 
NC_011083  SeHA_C1487  putative acyl-CoA dehydrogenase  45.67 
 
 
383 aa  348  6e-95  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00971669 
 
 
-
 
NC_011149  SeAg_B1816  putative acyl-CoA dehydrogenase  45.67 
 
 
383 aa  348  6e-95  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.297013  n/a   
 
 
-
 
NC_011205  SeD_A1987  putative acyl-CoA dehydrogenase  45.67 
 
 
383 aa  348  9e-95  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.143395  hitchhiker  0.00158428 
 
 
-
 
NC_012880  Dd703_1388  putative acyl-CoA dehydrogenase  44.88 
 
 
383 aa  347  2e-94  Dickeya dadantii Ech703  Bacteria  normal  0.977333  n/a   
 
 
-
 
NC_011830  Dhaf_4600  putative acyl-CoA dehydrogenase  43.68 
 
 
380 aa  327  1.0000000000000001e-88  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1021  putative acyl-CoA dehydrogenase  43.08 
 
 
383 aa  322  9.000000000000001e-87  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2878  putative acyl-CoA dehydrogenase  40.77 
 
 
391 aa  312  5.999999999999999e-84  Eggerthella lenta DSM 2243  Bacteria  normal  0.623288  normal 
 
 
-
 
NC_013204  Elen_3098  acyl-CoA dehydrogenase domain protein  35.68 
 
 
385 aa  253  3e-66  Eggerthella lenta DSM 2243  Bacteria  normal  0.509328  hitchhiker  0.00141201 
 
 
-
 
NC_013165  Shel_09220  acyl-CoA dehydrogenase  34.29 
 
 
385 aa  231  2e-59  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.605884  normal  0.299074 
 
 
-
 
NC_011830  Dhaf_0310  putative acyl-CoA dehydrogenase  37.53 
 
 
383 aa  221  1.9999999999999999e-56  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.268157  n/a   
 
 
-
 
NC_013411  GYMC61_2439  acyl-CoA dehydrogenase domain protein  33.16 
 
 
380 aa  211  2e-53  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_0249  acyl-CoA dehydrogenase domain-containing protein  30.71 
 
 
383 aa  211  2e-53  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.538468  normal  0.417839 
 
 
-
 
NC_013170  Ccur_08800  acyl-CoA dehydrogenase  32.98 
 
 
384 aa  209  5e-53  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.320154 
 
 
-
 
NC_012793  GWCH70_1843  acyl-CoA dehydrogenase domain protein  31.93 
 
 
380 aa  206  5e-52  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0319  acyl-CoA dehydrogenase domain-containing protein  29.66 
 
 
383 aa  202  7e-51  Roseiflexus sp. RS-1  Bacteria  normal  0.339666  normal  0.0442463 
 
 
-
 
NC_013204  Elen_1840  acyl-CoA dehydrogenase domain protein  31.28 
 
 
384 aa  202  9.999999999999999e-51  Eggerthella lenta DSM 2243  Bacteria  normal  0.0618853  normal 
 
 
-
 
NC_008009  Acid345_2369  acyl-CoA dehydrogenase-like  32.11 
 
 
380 aa  197  2.0000000000000003e-49  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_1861  acyl-CoA dehydrogenase domain protein  32.2 
 
 
394 aa  195  1e-48  Eggerthella lenta DSM 2243  Bacteria  normal  0.128157  normal  0.323931 
 
 
-
 
NC_013739  Cwoe_1590  acyl-CoA dehydrogenase domain protein  32.11 
 
 
396 aa  194  1e-48  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.663907 
 
 
-
 
NC_011725  BCB4264_A5464  acyl-CoA dehydrogenase  31.94 
 
 
379 aa  193  3e-48  Bacillus cereus B4264  Bacteria  unclonable  0.0000608426  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5139  acyl-CoA dehydrogenase domain-containing protein  32.2 
 
 
379 aa  194  3e-48  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5519  acyl-CoA dehydrogenase  31.94 
 
 
379 aa  193  5e-48  Bacillus cereus AH187  Bacteria  normal  0.814074  n/a   
 
 
-
 
NC_005945  BAS5190  acyl-CoA dehydrogenase  31.94 
 
 
379 aa  192  6e-48  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5586  acyl-CoA dehydrogenase  31.94 
 
 
379 aa  192  6e-48  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5472  acyl-CoA dehydrogenase  31.94 
 
 
379 aa  192  7e-48  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5025  butyryl-CoA dehydrogenase (short-chain acyl-CoA dehydrogenase)  31.94 
 
 
379 aa  192  8e-48  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5434  acyl-CoA dehydrogenase  31.94 
 
 
379 aa  192  8e-48  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000000286159 
 
 
-
 
NC_006274  BCZK5041  acyl-CoA dehydrogenase  31.94 
 
 
379 aa  192  9e-48  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5488  acyl-CoA dehydrogenase  31.68 
 
 
379 aa  192  1e-47  Bacillus cereus G9842  Bacteria  normal  0.270181  hitchhiker  1.62736e-22 
 
 
-
 
NC_013205  Aaci_2056  acyl-CoA dehydrogenase domain protein  31.03 
 
 
377 aa  191  2e-47  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.232194  n/a   
 
 
-
 
NC_009438  Sputcn32_1399  acyl-CoA dehydrogenase domain-containing protein  30.79 
 
 
385 aa  191  2e-47  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1669  butyryl-CoA dehydrogenase  31.32 
 
 
385 aa  191  2e-47  Shewanella loihica PV-4  Bacteria  normal  0.260436  hitchhiker  0.00156032 
 
 
-
 
NC_009253  Dred_0402  acyl-CoA dehydrogenase domain-containing protein  31.5 
 
 
380 aa  189  5e-47  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1109  acyl-CoA dehydrogenase domain-containing protein  32.72 
 
 
388 aa  189  5e-47  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.168915  normal 
 
 
-
 
NC_009921  Franean1_1608  acyl-CoA dehydrogenase domain-containing protein  30.81 
 
 
388 aa  189  5.999999999999999e-47  Frankia sp. EAN1pec  Bacteria  normal  0.0385936  normal 
 
 
-
 
NC_009901  Spea_2781  acyl-CoA dehydrogenase domain-containing protein  31.32 
 
 
385 aa  189  8e-47  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2382  acyl-CoA dehydrogenase domain protein  31.95 
 
 
389 aa  188  1e-46  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1052  acyl-CoA dehydrogenase domain protein  31.27 
 
 
386 aa  188  1e-46  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2854  acyl-CoA dehydrogenase domain protein  30.53 
 
 
385 aa  188  1e-46  Shewanella baltica OS223  Bacteria  normal  0.715109  hitchhiker  0.0000000460252 
 
 
-
 
NC_009997  Sbal195_1527  acyl-CoA dehydrogenase domain-containing protein  30.53 
 
 
385 aa  188  1e-46  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1491  acyl-CoA dehydrogenase domain-containing protein  30.53 
 
 
385 aa  188  1e-46  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1497  acyl-CoA dehydrogenase domain-containing protein  30.53 
 
 
385 aa  188  1e-46  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_2662  acyl-CoA dehydrogenase domain-containing protein  31.05 
 
 
385 aa  187  2e-46  Shewanella sp. MR-7  Bacteria  normal  0.553599  normal 
 
 
-
 
NC_008577  Shewana3_2769  acyl-CoA dehydrogenase domain-containing protein  31.05 
 
 
385 aa  187  2e-46  Shewanella sp. ANA-3  Bacteria  normal  normal  0.329604 
 
 
-
 
NC_009523  RoseRS_3775  acyl-CoA dehydrogenase domain-containing protein  32.02 
 
 
388 aa  187  2e-46  Roseiflexus sp. RS-1  Bacteria  normal  0.0119178  unclonable  0.00000752707 
 
 
-
 
NC_008321  Shewmr4_2595  acyl-CoA dehydrogenase domain-containing protein  31.05 
 
 
385 aa  187  3e-46  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.000133331 
 
 
-
 
NC_013743  Htur_0919  acyl-CoA dehydrogenase domain protein  32.47 
 
 
383 aa  186  5e-46  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007954  Sden_1941  butyryl-CoA dehydrogenase  31.84 
 
 
385 aa  186  8e-46  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3341  acyl-CoA dehydrogenase domain protein  30.73 
 
 
379 aa  186  8e-46  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1340  butyryl-CoA dehydrogenase  31.22 
 
 
385 aa  185  1.0000000000000001e-45  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.92296  n/a   
 
 
-
 
NC_013457  VEA_000373  branched-chain acyl-CoA dehydrogenase  31.05 
 
 
384 aa  185  1.0000000000000001e-45  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2216  acyl-CoA dehydrogenase domain-containing protein  29.95 
 
 
375 aa  184  2.0000000000000003e-45  Pseudomonas putida KT2440  Bacteria  normal  0.585123  normal 
 
 
-
 
NC_007517  Gmet_3307  Acyl-CoA dehydrogenase-like  28.57 
 
 
380 aa  184  2.0000000000000003e-45  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2863  acyl-CoA dehydrogenase domain protein  30.71 
 
 
380 aa  184  2.0000000000000003e-45  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1679  acyl-CoA dehydrogenase family protein  30.53 
 
 
385 aa  184  3e-45  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_3455  acyl-CoA dehydrogenase domain-containing protein  30.93 
 
 
375 aa  184  3e-45  Pseudomonas putida W619  Bacteria  normal  normal  0.129524 
 
 
-
 
NC_009512  Pput_3522  acyl-CoA dehydrogenase domain-containing protein  29.95 
 
 
375 aa  184  3e-45  Pseudomonas putida F1  Bacteria  normal  normal  0.0559083 
 
 
-
 
NC_009831  Ssed_1475  butyryl-CoA dehydrogenase  30.26 
 
 
385 aa  183  4.0000000000000006e-45  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.00937307 
 
 
-
 
NC_009483  Gura_3040  acyl-CoA dehydrogenase domain-containing protein  30.53 
 
 
402 aa  183  5.0000000000000004e-45  Geobacter uraniireducens Rf4  Bacteria  normal  0.0629704  n/a   
 
 
-
 
NC_011138  MADE_01905  Acyl-CoA dehydrogenase family protein  32.2 
 
 
397 aa  182  6e-45  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.271746  n/a   
 
 
-
 
NC_009718  Fnod_0585  acyl-CoA dehydrogenase domain-containing protein  31.94 
 
 
379 aa  182  6e-45  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0155  acyl-CoA dehydrogenase domain protein  29.84 
 
 
388 aa  182  7e-45  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.000000954759  n/a   
 
 
-
 
NC_014150  Bmur_1546  acyl-CoA dehydrogenase domain protein  31.15 
 
 
381 aa  182  8.000000000000001e-45  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2037  acyl-CoA dehydrogenase domain-containing protein  28.88 
 
 
375 aa  182  9.000000000000001e-45  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.666233 
 
 
-
 
NC_008025  Dgeo_0736  acyl-CoA dehydrogenase-like protein  29.82 
 
 
379 aa  181  1e-44  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.763418 
 
 
-
 
NC_013457  VEA_001547  branched-chain acyl-CoA dehydrogenase  30.53 
 
 
384 aa  181  2e-44  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1715  Acyl-CoA dehydrogenase-like  29.21 
 
 
379 aa  181  2e-44  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_2547  acyl-CoA dehydrogenase  29.4 
 
 
381 aa  181  2e-44  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3450  acyl-CoA dehydrogenase domain protein  30.39 
 
 
380 aa  181  2e-44  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010718  Nther_1881  butyryl-CoA dehydrogenase  29.21 
 
 
379 aa  181  2e-44  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.593492  normal  0.222475 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>