Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3182 |
Symbol | |
ID | 5611557 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3838297 |
End bp | 3839199 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640934120 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001474914 |
Protein GI | 157376314 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCTGC ATAAGCAATT TGATGTGAAT CTACTTAGGG TTTTTTTAGC TGTATGCCGT ACAGGGTCGT ACACCTTAGC TGCTGATGAG TTAGATCTGA CCCAGCCCTC AGTGAGTAAT GCTATCTCAC GTTTTAAAGC CGTTATTGGA GAGGAGCTTT TTGTTAGATC GGGTCGCAAC ATAAAACCGA CAGCCATGGC CAATTATCTC TATGAGCAAC TTAATGACTC ATTTTCTAAT ATTGAACAGA CAATCTCAGG CTTAGAGGGC TTTAATGCTG CGACATCTGA GCGTCAATTC GTTATTTTAG CCGGAGATGT GGTTAGTCAC TTCCTGCAGC CTGCTCTGGA GAAGATAGTT AAAGATCTTC CTATTGAAAT TGTTTTTCGG GAGCCGCCGG ATCATGATGA AGATATTATG GAAAAGCTAT ATCTGGAGCA AGCTGATCTC GTAATCGATA TGCAACTGCC TATGGATCTT CGTTTCGAAA AGAGGTTGCT TATGCGCGAA CTCCCCATTT GCGTAGTAAG CAAAGAGCAT CCTCGTATTG GGGATAAGAT ATCCCGGGAT GAGTACTTTG ATGAAAGACA TGTCGTGATC AAGATGAGGA GGTTTAATCT TACTGCCGTA GATCTATTGA CTGACGAGGT CTTACCCGCA CGTAAGGTTT ATAGTGTTAA GTCCTCATTA TTGACGGCTT TTGATAGCCT GGCTTCCAGT GATTCACTTT GTATATCTCC CAGAAGGTAT GCTGAAGAAT ACACAGATAT GTTTAACCTT AAGTTACTGG AGCCACCTTT TAAAATGAAT GGTATTGATA TTGAGATGGT GTGGAAGCGT AAACATGATA AAAACCCCGC ACATATCTGG CTTAGAGAGC AGGTGTTATC TTTAGTTAAG TAA
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Protein sequence | MTLHKQFDVN LLRVFLAVCR TGSYTLAADE LDLTQPSVSN AISRFKAVIG EELFVRSGRN IKPTAMANYL YEQLNDSFSN IEQTISGLEG FNAATSERQF VILAGDVVSH FLQPALEKIV KDLPIEIVFR EPPDHDEDIM EKLYLEQADL VIDMQLPMDL RFEKRLLMRE LPICVVSKEH PRIGDKISRD EYFDERHVVI KMRRFNLTAV DLLTDEVLPA RKVYSVKSSL LTAFDSLASS DSLCISPRRY AEEYTDMFNL KLLEPPFKMN GIDIEMVWKR KHDKNPAHIW LREQVLSLVK
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