| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3169 |
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| Symbol | |
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| ID | 5610912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3827342 |
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| End bp | 3828178 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934107 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_001474901 |
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| Protein GI | 157376301 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAGAAG AGACGGTTGA AAAAGATCCA GATATAGCTG AGTCTCCGGA AATGGTAGAA
GATGCTGTCG AAGAGTCAGC GCCCGAAATC GAGATTCTGT TTGAAGATGA TGATGTGGTG
GCTATTCATA AGCCTGCAGG CCTGTTAGTG CATCGCTCTT ATCTGGCACG TCGCGAGCGT
TTTTTTGCGA TGCAATTAAC CCGCGATAAA GTGGGTTGCC ATGTATTTCC TGTACACAGA
CTCGACAGGC CAACCTCGGG TGTGTTGCTG TTTGCCAAGA GTAGCGAGAT GGCCAATAAA
TTGTGTGAAC AATTTGAAGC TAAAACTGTA GATAAGCATT ACTTAGCCAT AGTCAGGGGG
AATATGCATG AGGCCGACAC CTTAGATTAT GCGCTTAAAG TGGAGCTTGA TGATCACGGT
GATAAAGATG TTGATCCTAA TAAAGCTGCG CAAGATGCGG TAACCAGCTA TCAGCCGCTG
CTTAATACTG AAATCCCTTT TCCGTCGGGA CGATATGCAA CGAGTCGATA TGCGTTGGTA
AAGTTAACTC CGCATACAGG GCGTAAACAT CAGTTACGTC GTCATATGGC TCATTTAAGA
CACCCTATTG TCGGCGACAC AACCCATGGT GACGGTAAGC AGAATAAATT CTTCAGAGAA
CATTTCTCGA TGAACAGACT ATGGTTGATC GCCAAACACC TCTCTTTCGA TCACCCCAGA
AGTGGAGAGC GTATCACTAT CGAAACAGAG CTTGAGGAGC AGTGGTTCAC CTTGTTTGAG
GCGTTTGGGT GGGATGAAGA GAAGTTAGCG ACGGATAGAT CTTATTTTAT TGTGTAA
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| Protein sequence | MLEETVEKDP DIAESPEMVE DAVEESAPEI EILFEDDDVV AIHKPAGLLV HRSYLARRER
FFAMQLTRDK VGCHVFPVHR LDRPTSGVLL FAKSSEMANK LCEQFEAKTV DKHYLAIVRG
NMHEADTLDY ALKVELDDHG DKDVDPNKAA QDAVTSYQPL LNTEIPFPSG RYATSRYALV
KLTPHTGRKH QLRRHMAHLR HPIVGDTTHG DGKQNKFFRE HFSMNRLWLI AKHLSFDHPR
SGERITIETE LEEQWFTLFE AFGWDEEKLA TDRSYFIV
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