| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3136 |
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| Symbol | |
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| ID | 5611291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3784930 |
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| End bp | 3786894 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934074 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_001474868 |
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| Protein GI | 157376268 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.601879 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATGC CAAATGCAGC GTCATCCAAT CGATTCGATA TGGGCGATAT GGATACCTTT
CCTAAGATCC TCAGGCATAA CGCCACACTC TGGCCCGATG ATATTGCCAT GCGGGAGAAA
GAGTTTGGGA TCTGGAGTGA ATTTAGCTGG TTAGATTATC ATAACCGAGT GAAGTGGATG
ACCCTGGCCC TGTCCTCTAT GGGCATAGAG GCAAACAGCA CCATCGCCCT GCTGGGAGAC
AACAGACCCG AGTGGGTATG GGGTGAAGTT GCGGCCCATG CCATGAGCTG TTTCTCTCTG
GGGGTCTATC AGGACTCACT GCATGAAGAG GTGGCTTATC TTCTCAACCG AAGCAATGCC
AGCGTGGTTA TTGCCGAGGA TGAAGAGCAG TGTGACAAGC TACTTGAGCT CGAAGATAGT
ATCCCCAGCG TCAAATGTAT CGTCTATTGT GACCCACGAG GCATGCGCAA ATATGATGAC
CCCCGCCTTA TCAGTGTCGA AGAGATCTAT GCATTAGGAC AGCGAATCGA CAGAGAGACG
CCCAGGCTCT ACGATGCATT CGTCGATGCG GGCAAGGCCG AGAATATCGC CATCTACTGC
ACCACCTCAG GTACCACTTC GAAGCCAAAA ATTGTACTGC TTCAAGGCAG CAAGTTTATC
GACCACTGCT GCTCATACCT GCGTGCCGAC CCGCGTGCGC CGGGTGATAA CTATGTTTCC
GTATTGCCTC TGCCCTGGAT CATGGAGCAG GTGTATGCGG TGGGTCAGGC ATTGATCGCC
AGGCAGATAG TCAACTTCGT AGAAGAGCAG GAGACCATGA TGGCCGATCT GCGTGAAATC
GGTCCCAGTT TTGTCCTGCT CGCCCCCAGA GTCTGGGAGG GAATATTGGC CGATGTGCAG
GCGAGAATGA TGGACTCTTC CCGTCTGAAG CAGGCGCTGT TTAATTTCGC CATGAACAGG
GCGCAGAAAA GTTTACAGCA GGGCCGAAAG TCCCGTTTCG CCGACCTTCT GTTGATGAGG
GCGCTGCGAG ACAGACTCGG TTTCTCATTT TTAAAGTCTG CAGCAACTGG TGGCGCCGCC
ATGGGCCCGG ATACTTTCCG GTTCTTCCAG AGTATCGGGG TACCACTGCG TCAACTCTAT
GGTCAGACCG AGATGTGTGG GGCCTACACG ATACACATGG AAGGTGATGT GGATTATGAC
AGCGTCGGTG TCGCCTTCGA CAGCGCCGAG GTTAAGGTTA TCAACTGTGA CAGCGAAGGG
GTGGGCGAGG TGATCGCCAA AACCTTAGGT ATGTTCAACG GTTACCTGGG TGATCAGGAG
GCATTCGACG AAGATGTGAA ACAGGGGTGG ATGCATACAG GAGATGCGGG CTATTTCAAG
CCATCGGGTC ACCTTGTGGT TATCGACAGA ATTAAAGATT TAGCTAAAAC GAGCCAGGGT
ATTCAGTACT CTCCTCAATA TATAGAGAAT AAACTTAAGT TCTCCTCCTT TATCGGAGAG
GCGGTGATCC TTGGCAAAGA GAGACCCTAT CTGTCTGCCA TCTTATGTAT ACGTTTCAGT
ATCGTCTCTA AATGGGCCGA GCAACGTGGC CTCGCCTTTA CTAACTACAC CAACCTGTCA
TCGCTGCCCG AGGTCTATGA AAAGCTGTCT GAGGAGATTG AGATAGTGAA TCAGTCTCTG
CCCGATGCCC AGAAGATCAG TAAATTTATC CTGCTCTATA AGGAACTCGA TGCCGATGAT
GGCGAGTTAA CCCGTACCCG CAAGGTCAGG CGTGGTGTGA TAGCCGATAA ATACGGCGAC
ATCATCTCAT CTATCTATAA CGATAAACCT CATGTGGATA TCGATACCGT GATCACCTTC
CAGGATGGCA GTAAGTCCCG AATTCAGACC CAACTTAAGG TGGCAACGGT TATTGAGACC
ACAAGCGTAT CCGAGACAGA AATAGAGCAA AGGAGAGCGT CATGA
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| Protein sequence | MNMPNAASSN RFDMGDMDTF PKILRHNATL WPDDIAMREK EFGIWSEFSW LDYHNRVKWM
TLALSSMGIE ANSTIALLGD NRPEWVWGEV AAHAMSCFSL GVYQDSLHEE VAYLLNRSNA
SVVIAEDEEQ CDKLLELEDS IPSVKCIVYC DPRGMRKYDD PRLISVEEIY ALGQRIDRET
PRLYDAFVDA GKAENIAIYC TTSGTTSKPK IVLLQGSKFI DHCCSYLRAD PRAPGDNYVS
VLPLPWIMEQ VYAVGQALIA RQIVNFVEEQ ETMMADLREI GPSFVLLAPR VWEGILADVQ
ARMMDSSRLK QALFNFAMNR AQKSLQQGRK SRFADLLLMR ALRDRLGFSF LKSAATGGAA
MGPDTFRFFQ SIGVPLRQLY GQTEMCGAYT IHMEGDVDYD SVGVAFDSAE VKVINCDSEG
VGEVIAKTLG MFNGYLGDQE AFDEDVKQGW MHTGDAGYFK PSGHLVVIDR IKDLAKTSQG
IQYSPQYIEN KLKFSSFIGE AVILGKERPY LSAILCIRFS IVSKWAEQRG LAFTNYTNLS
SLPEVYEKLS EEIEIVNQSL PDAQKISKFI LLYKELDADD GELTRTRKVR RGVIADKYGD
IISSIYNDKP HVDIDTVITF QDGSKSRIQT QLKVATVIET TSVSETEIEQ RRAS
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