Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3112 |
Symbol | |
ID | 5611697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3749856 |
End bp | 3750980 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934050 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001474844 |
Protein GI | 157376244 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTATTT TCAGAACCAA CTCCAGGAAA AAGGGCTTAA CAGGTCTCTT GCTTGTTAGC TTTCTCAGCG CATGCGAAGC GGAAGTTACT GCTCATGCAA CACAGCCGGA GTTGCAATCA GTAACAACTA TGACCTTAAC TCCTTCAACC TCATATCTGC ATACCCAAGA GTTCACGGGT ACGATTCGAG CGGGTAACAC CACGGGGATT GGATTCGAGC TTTCGGGAAA AATCAGGCGA CTTGCCGTCG ATAGCGGCGA TCAGGTAAAA GAGGGGCAGC TGTTAGCCCA ACTGGATACC CGCTTATTAG AAGCCGAGAA GCAGGAGTTG GACGCAAGTT TGTCACAAAA TAGTGCCGAC CTTAACCTGG CCACTAACAC ACTGAACCGA AGCCTTAAAT TAAAGCAGCA AGGTTACACC TCTGAGCAAC AACTCGATGA ACTCAAAGGC CAGCTGGCCA GTTTGCTTGC GGCCCAAAAA AGACTCAAGG CATCCATTTA TGCCAATACA TTGAGAATCG AAAAATCGTC ACTGCTTGCG CCATTTAGCG GCGTGATAAG CAAAAGGAAT AACAACTTAG GTGAAGTGAT CGCACTGGGC ACCCCGGTAT TTACCCTCAT TGAAAATAAC AATCCGCAAG CATTTGTCGG TGTCCCGATT AAGGTCGCTC AAAGCCTGAA GGCTGCACAG GATATCTCAC TCAGGGTCGC AGATACCCAC TACACGGCTC AAATTGCGGG GATTGGAGCC GAAGTTAACC CTATCACTCG CACCGTGCCA TTAAGGCTAA CGTTACCTCA AGATGCGAGT GTCATTAATG GCGAGCTGAC CTACCTGGCC TATGAGAATG AGATTGAACA GGAAGGATAT TGGGTGCCGA TCTCATCGCT GACCGATGGT ATCAGGGGAC TGTGGAACCT GTATGTCATC ACAGCCGGTG AAGCGGCACA AAAACCTGAG AGTTTCAGCA TAGAACGCAG AGATGTTGAA ATTATCTATA CAAAAAATGA TGAGGCTTAT ATTCGGGGGG CGGTGAAAAG TGGAGAAGAG TTTATCAGTC AGGGACTGCA TAAACTTGTT GTGGGACAAA AAGTAAAGCG CAACACCACT GTGGCATCGA GGTAG
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Protein sequence | MSIFRTNSRK KGLTGLLLVS FLSACEAEVT AHATQPELQS VTTMTLTPST SYLHTQEFTG TIRAGNTTGI GFELSGKIRR LAVDSGDQVK EGQLLAQLDT RLLEAEKQEL DASLSQNSAD LNLATNTLNR SLKLKQQGYT SEQQLDELKG QLASLLAAQK RLKASIYANT LRIEKSSLLA PFSGVISKRN NNLGEVIALG TPVFTLIENN NPQAFVGVPI KVAQSLKAAQ DISLRVADTH YTAQIAGIGA EVNPITRTVP LRLTLPQDAS VINGELTYLA YENEIEQEGY WVPISSLTDG IRGLWNLYVI TAGEAAQKPE SFSIERRDVE IIYTKNDEAY IRGAVKSGEE FISQGLHKLV VGQKVKRNTT VASR
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