| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3107 |
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| Symbol | |
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| ID | 5611119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3743957 |
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| End bp | 3746482 |
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| Gene Length | 2526 bp |
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| Protein Length | 841 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 640934045 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474839 |
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| Protein GI | 157376239 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2604] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTATTAA CTGAATCCAA CATACAAAAT ACTTTTTCAA TTAGTCCGTT TGATGAATAT
TATCTGCCGA GTGTCAATAG GCATATGTTT GATACTATTG ATTCTAAAAC GCAATATGAT
AAAAAATTCA AAAACGACTT CGCCAAAGAG GATACACTAA ATATCGTCGT TGGAATGGAT
TCAGGGCTAT TAGTTAACTA CTTGTTAGAG CAAGGAGTGC CTAAAGGAAG TATTTTTATC
TTTGTTGAGC TAGATGCAGT GCTCGAACTG CTAAACATCG ATATCCCTAA GAGTCTATCA
GACAAATTAT TCATTTATAG TTTGGAAGAG TTTCAAGATA ACTTTCCATC TGTAGCCTAT
GGCATCTACA TACTTAAAAA TAACGTAAAA CACCATAGAA GCTTGGCCGC AACCTCAAGC
CATCTCCCAG AATACAGCAT ATTTAACCGA CAAATAATTA AAATGCTAGA GGCTGAAGAT
TTAGAACAAA ACCAAAACTC ATCTCAAAAA GTTTATTATA AACAACAATT TAAGAACATT
TCTGAAAATG TACAACCCGC ATCACTATTG AGTAATAAAT TTAATGGAAA AACCTGCTTG
GTTGTCGCAG GAGGACCATC ACTCGATGAC AATATCGACT GGATAAAGAA TAATCATCAA
AACCTGTTTA TCATTGCTGT ATCTCGAATC GCTGGTAAAT TAGCAAAAGA AGGGATACCT
CCCCACATCA TCGTCTCAGT GGATCCCTAT GACTTTAGTT TTGAAGTGAA TAGAGACATG
ATGGCTCTCG CCGACTCCAG TCTTTTTGTG AATTCATTCC ATGTGAATTC AAGGCTCCTA
GGTCAGTGGC AAGGGAAAAA CCTATTTATG GACTACAAAT ACCCTTGGCA GTTAGAGTAC
ACTGACAATA TAGATACCAT GGGCCCTACG GTTACCAATG CCTCTGTACA CTTAGCAACC
CAAATGGGAT TTTCTCGTAT CTTATTAACA GGTGTCGATC TCTGCTTCAC AGATACGGGC
TTCACCCACT CACAAGGCTC AGTGGAATCT AAAATAGGTC CAAATCTAGG GATCATGGGG
CAATGGATAG AGACCTATGG AGGTAAGAAA GCTGAAACAG TAGTTCAACT AAAACTGGCC
ATGAATGCCT TAGCAGGAGA AGCTTCTGCC AATCCAGAAA TAGAATTCCT GAACCTTTCT
CTCAATGCTG CCAAGATTAA AGGTATTACT CATCAAAATG TTGACCAAAT CCAGCTTTCT
TCAAATGCTT GCTCGGCCAC ACAATTACTA GAATCAATTC CCGATTTAAG CATTGAAGAC
AGGAAACAAG ATAATCTATT GTCTCAAAAA GAGTTCAGCA GATTCTACGA TACATTAAAT
GACATCATAC ATCTCTCGGA TGAAGCCCAA GATTTAAACA AACAGTTAAA AGAGCCAAAA
TCACCAACAA ATAAAACAAA AAAAAATACA AAAAGAATTG AGGCCATAGA TAAAAAGTTC
AACCAAAAAT ACGCTGGCGT CGCCCGATTG ATCAAAACCT ATGGTTTTTC CGAGTTTTCA
GACTTTTTAA CGACAAAGAA AACGGATGAC TGGGATGCTG AACATTTGCA CCAGATGTCC
CATGATTACT ATCAAGCCTT CAAATCGATA GCTAAACAAC TTTTAGAACT CGTCGACGAC
ACCCGCACTC GATTAGACCA TAGGCTTGAT GAGCTATCCC CTGATGCAAA GTTGATCAAA
CTCGTAGAGT TTTGGCGAGA AGAAGAGCAA CATGGCCGTG TTAACATCTG GCTTAAAACT
CACCCAGATT GGGAATCAAA TGAAAAATTA TCAAAACAGC CTGAGCTGCT AAAAGAATAT
AAACAGCAGT TAATAGCGGT TAAAAATGAG TATTTAGAAC AGCTGGCTAT CGTACCCCAG
AAGTATATCG ATACAGTTAA AGATACTGCA TCGATGGAAA ATGTATTTGA AAAAATTATC
GTACTTATCA GAGATGAAGA TCATACAGGT CTTGTAAAGA TGGCGACTAA CCTAAAAAAA
CTTGCCGACA ATGACGATGA AGCTAAGCGA CTTTTCCATT TATCATATTC CCATCAATTA
TTAATTGAGA AAAAAGAGAG CCAAGCTCTA GAAGTGTTAT TAGCATTAGA TGAGGCACTT
CAATCTGAAA TAGAGTTAAA AAAAATCACA ACATTAGCGC TAAAGTTAGG TGAGTTAGAC
ATCGCTGAAA AAGCAATGTC TCGTATATCT GATTATAGTG ATGAATATAT GCCACAACAT
GCTCATGTTT TAAAGTTACA AGGTAGACTA CAAGAGTCAA TAAATCTCTA TTTAGACTAC
CTTGAAAAGT ACCCCTCTGA TGTCACTACT TGGCTTAAGT TCGGTAGCTT CATGTTCGAT
ATTGACCAGA TACAAGCCGC TATCGATGCC TTTAGTCATG TTATTCAATC CGATCCTGAT
AATCAGGTCG CGCTGAGTTA TCTGTCCCGT ATCGAGACTG CTCTTAACGC GAGTCAAGAC
ACATAA
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| Protein sequence | MLLTESNIQN TFSISPFDEY YLPSVNRHMF DTIDSKTQYD KKFKNDFAKE DTLNIVVGMD
SGLLVNYLLE QGVPKGSIFI FVELDAVLEL LNIDIPKSLS DKLFIYSLEE FQDNFPSVAY
GIYILKNNVK HHRSLAATSS HLPEYSIFNR QIIKMLEAED LEQNQNSSQK VYYKQQFKNI
SENVQPASLL SNKFNGKTCL VVAGGPSLDD NIDWIKNNHQ NLFIIAVSRI AGKLAKEGIP
PHIIVSVDPY DFSFEVNRDM MALADSSLFV NSFHVNSRLL GQWQGKNLFM DYKYPWQLEY
TDNIDTMGPT VTNASVHLAT QMGFSRILLT GVDLCFTDTG FTHSQGSVES KIGPNLGIMG
QWIETYGGKK AETVVQLKLA MNALAGEASA NPEIEFLNLS LNAAKIKGIT HQNVDQIQLS
SNACSATQLL ESIPDLSIED RKQDNLLSQK EFSRFYDTLN DIIHLSDEAQ DLNKQLKEPK
SPTNKTKKNT KRIEAIDKKF NQKYAGVARL IKTYGFSEFS DFLTTKKTDD WDAEHLHQMS
HDYYQAFKSI AKQLLELVDD TRTRLDHRLD ELSPDAKLIK LVEFWREEEQ HGRVNIWLKT
HPDWESNEKL SKQPELLKEY KQQLIAVKNE YLEQLAIVPQ KYIDTVKDTA SMENVFEKII
VLIRDEDHTG LVKMATNLKK LADNDDEAKR LFHLSYSHQL LIEKKESQAL EVLLALDEAL
QSEIELKKIT TLALKLGELD IAEKAMSRIS DYSDEYMPQH AHVLKLQGRL QESINLYLDY
LEKYPSDVTT WLKFGSFMFD IDQIQAAIDA FSHVIQSDPD NQVALSYLSR IETALNASQD
T
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