| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3103 |
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| Symbol | |
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| ID | 5611088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3740823 |
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| End bp | 3741803 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640934041 |
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| Product | dehydrogenase |
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| Protein accession | YP_001474835 |
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| Protein GI | 157376235 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAA TTGCAGTAAT TGGTCTGGGC AATATCGCTA AGCGCCATAG ACAAAACCTT
AAGCTTATTT ATCCTGAAGC GACGATTATC GCATTATCTG CCAGTGGCAG GAGACCAAGC
GAAAAAATCG AATTTGCCGA TGTGTTACTT ACCAATCTTA TGTCGGTCAT AGAAAGTAAA
CCTGAACTTG TCATTGTCGC CTCCCCAGCG CCATTCCATG AGCATCATGC CAGTGAGTTT
ATTAAGCGTC GTATCCCGGT ATTGATTGAA AAGCCAATCG CATCAGAACC TCAAAGTTCC
CAACGCTTGC TTGAGCTCAC TCAAGAGTAT TCGGCCCAAG TCATGGTGGG TTACTGTTTA
AGATATTTAA GCTCTGCAAT TGAGATGAAA CAGCTTTTAT CGCAAAATTT TATCGGAGAA
ATATACAACT TCACGGCCAG TGTAGGGCAG TATCTGCCCG ATTGGCGACC CAATAAACAC
TATGCAGATT CAGTCTCAGC CAATGAATCA CTCGGTGGTG GTGCTCTACT CGAATTAAGT
CATGAGCTGG ATTACTTACA CTGGTTATTA GGCCCTTTAG AGCTCGAATA TGCTCAACTT
AGAAGTACAA AGGAACTGAA GTTAGAAGTT GAAGAGATTG CCGATCTTGT ATTGACCAAC
CAGAAAGGGA CCATTTGTTC TCTCCACATG GATTTCATCC AAAAGCAGCC CCAAAGAGAG
TGCACATTTA TTGGCTCAAA AGGCCGACTA CATTGGGACT TATTAGCGAA TACTATCACT
CATCACTGTA GTGAAGGCAC ACAAATCCTA TGTTCGGAAC CTGAATGGGA CAAAAACCAA
ATGTACTTAA ATATGGTGAC TGAGTTTATT GCCAATATTC AGCGTGGAAA AAACTCAACG
TTATCTTTGG AAGACGCTAA CCAGACTGTA AAACTTATCG CTCAAATTAA GCATGAAGCG
GTATGGGGAG TCGTTCAATG A
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| Protein sequence | MKTIAVIGLG NIAKRHRQNL KLIYPEATII ALSASGRRPS EKIEFADVLL TNLMSVIESK
PELVIVASPA PFHEHHASEF IKRRIPVLIE KPIASEPQSS QRLLELTQEY SAQVMVGYCL
RYLSSAIEMK QLLSQNFIGE IYNFTASVGQ YLPDWRPNKH YADSVSANES LGGGALLELS
HELDYLHWLL GPLELEYAQL RSTKELKLEV EEIADLVLTN QKGTICSLHM DFIQKQPQRE
CTFIGSKGRL HWDLLANTIT HHCSEGTQIL CSEPEWDKNQ MYLNMVTEFI ANIQRGKNST
LSLEDANQTV KLIAQIKHEA VWGVVQ
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