| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3101 |
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| Symbol | |
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| ID | 5611086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3739146 |
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| End bp | 3739766 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934039 |
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| Product | sialic acid biosynthesis protein NeuD |
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| Protein accession | YP_001474833 |
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| Protein GI | 157376233 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0110] Acetyltransferase (isoleucine patch superfamily) |
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| TIGRFAM ID | [TIGR03570] sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCGGCT CAGGAGGTCA CGCTAGTGTT CTCGCCGATA TCTTACTTCA GCAAGAATAC
ACTTTACTGG CAGCGATTAG CCCGGATAAA GGCAACAGCC CACTCTTCAA AAACATTCAA
CATTTTGATT CTGATGATGA TATTTTACAA TTCTCTCCGG ATGAGGTTAA ATTAGTTAAT
GGTTTAGGCT CATTACCAAA TCAAAATTTA CGCAATGAGA TTTTTGACTA TTTTAGTCAA
CTCGGCTACC AATTCGAGAC AGTGATCTCC CGGGATGCAA TAGTATCTCC ATATTCGAGT
ATTGCCGCCG GAGCACAAGT GTTAACCGGC GCGATAATTC AAACTGGTGC AATGATTGGG
AGCAACAGCA TTGTCAACTC GGGGGCAATC GTCGAACACA ACTGCCATAT CGGCATACAT
AACCACATAG CGCCAGGTGC GACGATATGT GGCGGGGTTC ACACGGGTGC ACATGTCCAT
ATTGGGACTG GCGCCAATGT CATCCAAAGT GTTTCGATTG GCAAGCATAG TGTCGTTGCT
GCCGGCGCTA CGGTTACAAA AGATATGCCT GATAATTCCA TCGCTTATGG TTACAGAAGC
AAGATAGAGA TAAGGTCATA A
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| Protein sequence | MIGSGGHASV LADILLQQEY TLLAAISPDK GNSPLFKNIQ HFDSDDDILQ FSPDEVKLVN
GLGSLPNQNL RNEIFDYFSQ LGYQFETVIS RDAIVSPYSS IAAGAQVLTG AIIQTGAMIG
SNSIVNSGAI VEHNCHIGIH NHIAPGATIC GGVHTGAHVH IGTGANVIQS VSIGKHSVVA
AGATVTKDMP DNSIAYGYRS KIEIRS
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