Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3097 |
Symbol | |
ID | 5610638 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3734505 |
End bp | 3735716 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640934035 |
Product | nucleoside-diphosphate sugar epimerase |
Protein accession | YP_001474829 |
Protein GI | 157376229 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.876352 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACCAA CTGGTAGCCC AATGACTGAC ACCCTGAAAT TGATTGGAAG AGAGAAAGCA CTTTTTTCAT CAGACATTAG CCAACATGAA AGCCTGTTGG CCGGCGAAGT ATGTCGGTCG CGTTTTCTGG TTCTGGGTGG TGCCGGCTCA ATTGGTCAGG CCGTCGTTAA AGAGATCTTT AAGCGTTCCC CGTTGAAGCT TCACGTGGTC GATATTAGTG AAAATAATTT AACTGAACTA GTTAGAGATA TACGCAGCTC TTTTGGGTAT ATCCAAGGTG ACTTTCAAAC CTTTGCCCTT GATATAGACT CTATAGAATA TGACGCGTTT ATAAATCAAG ATGGCCTGTA TGATTACGTA CTGAATCTTT CAGCGCTGAA ACATGTAAGA AGCGAGAAAG ATCCCTTCAC CTTGATGCGT ATGATCAATG TTAATATTTT CAATACAGAC AAGACCATAG AACAGTCGAT AGACAGTGGC GTTAAGAAGT ATTTTTGTGT CTCCACCGAC AAGGCCGCAA ATCCGGTCAA TATGATGGGG GCATCTAAAC GTATCATGGA GATGTTCCTG ATGCGTCGTA GTCAAAATAT TACTATATCC ACCGCACGTT TCGCCAATGT GGCATTCTCT GATGGCTCTT TGCTACACAG TTTTAATCAG CGCATCTTGA AACATCAACC CATAGTCGCG CCAACTGACA TTAAGCGTTA TTTTGTCACA CCAAAAGAGT CCGGTGAGCT CTGTTTAATG TCCTGTATTT TTGGCGAGAA TAGAGATATC TTCTTTCCTA AGCTTGATGA ATCTCAACAC CTTATATCCT TTGCTGACAT AGCTAAAAGG TATCTTTTAG CTCGAGGCTA TGAAGCTTAT ATTTGCAGTA GCGAAGAGGA GGCCAGGCAA CTGGTATCCA CCCTACCCGC TAAGGGTCTG TGGCCATGCT ACTTCACTGT CAGTGATACC AGCGGAGAGA AAAATATTGA GGAGTTTTAT ACCGACAATG AAACCCTCGA TATGACCCGA TATGCAGAAC TGGGGATTAT TAAAAATGAT CTTGAATACG ATCCAGGGTT GATCGAACTG TTTGAAAAAA CGATTCAATC GATGAAGTCC TACAAATCAT GGAGCAAGAA GCAGTTAGTT GAGCTTTTTC ATCAAATGTT GCCTGAGTTC GGCCATAAAG AAACCGGGAA GTCTCTCGAT GAAAAAATGT AA
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Protein sequence | MRPTGSPMTD TLKLIGREKA LFSSDISQHE SLLAGEVCRS RFLVLGGAGS IGQAVVKEIF KRSPLKLHVV DISENNLTEL VRDIRSSFGY IQGDFQTFAL DIDSIEYDAF INQDGLYDYV LNLSALKHVR SEKDPFTLMR MINVNIFNTD KTIEQSIDSG VKKYFCVSTD KAANPVNMMG ASKRIMEMFL MRRSQNITIS TARFANVAFS DGSLLHSFNQ RILKHQPIVA PTDIKRYFVT PKESGELCLM SCIFGENRDI FFPKLDESQH LISFADIAKR YLLARGYEAY ICSSEEEARQ LVSTLPAKGL WPCYFTVSDT SGEKNIEEFY TDNETLDMTR YAELGIIKND LEYDPGLIEL FEKTIQSMKS YKSWSKKQLV ELFHQMLPEF GHKETGKSLD EKM
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