| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3062 |
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| Symbol | |
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| ID | 5612261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3698056 |
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| End bp | 3698502 |
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| Gene Length | 447 bp |
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| Protein Length | 148 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933999 |
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| Product | flagellar export protein FliJ |
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| Protein accession | YP_001474794 |
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| Protein GI | 157376194 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2882] Flagellar biosynthesis chaperone |
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| TIGRFAM ID | [TIGR02473] flagellar export protein FliJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.967691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.622604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTAAGC ATGATCCTTT AGACACCGTT TTAAAGCTGG CAACAGAAGC CGAAGAGCAA
GCCGCACTTC AGTTGCAGTC AGCCCAGTTG GCACTTCAGA AATGTCAGAG TCAGTTGGGA
GCGTTGAGAA ATTATCGATT AGACTATATG AAACAGATGG AAACTAATCA TGGTAAGACG
ATCAGTGCCA GTTATTATCA TCAATTCCAT CAGTTTGTTC GCCAGATCGA TGATGCCATT
GTCAAACAGA TAGCATCGGT TACCGAAGCC GATACTCAGA GGCTTCATCG ACAACAGTAT
TGGCAGGAGA AGCAGCAAAA GCGCAAGGCG GTCGAACTCT TGCTCGCCCA TAAAGCCGAG
AAGGCGCAAC AGGCAGAGTT AAGACGGGAG CAGAAACTAA CTGATGAGTT TGCTTCACAA
CAGTTTTATC GAAAGCGTTC CCGCTAG
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| Protein sequence | MAKHDPLDTV LKLATEAEEQ AALQLQSAQL ALQKCQSQLG ALRNYRLDYM KQMETNHGKT
ISASYYHQFH QFVRQIDDAI VKQIASVTEA DTQRLHRQQY WQEKQQKRKA VELLLAHKAE
KAQQAELRRE QKLTDEFASQ QFYRKRSR
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