| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3056 |
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| Symbol | fliP |
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| ID | 5612043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3692742 |
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| End bp | 3693488 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933993 |
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| Product | flagellar biosynthesis protein FliP |
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| Protein accession | YP_001474788 |
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| Protein GI | 157376188 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1338] Flagellar biosynthesis pathway, component FliP |
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| TIGRFAM ID | [TIGR01103] flagellar biosynthetic protein FliP |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.462693 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0898606 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACGGA TCCTGATTTT TATTGCGTTT AGCCTATTAC TTATTTCGCC GGAGGCCTTC
TCTCAAGGAG GCGTTCTACC CGCCGTAACT GTGACAACTG GCCCACAGGG CGAGACGCAA
TACTCTGTGA CTATGCAGAT ACTCTTGTTG ATGACCTCAC TGAGTTTTCT GCCTGCCATG
GTTATCATGT TAACCTCGTT CACGAGAATC ATCGTAGTCC TGTCTATTCT TCGTCAGGCG
ATTGGTCTTC AGCAAGCACC GTCTAATCAG GTGTTGATCG GAATGAGTCT GTTCCTCACT
TTCTTCATTA TGTCTCCCGT TTTCGATAAA GTTTACGATG ATGCGGTCAA GCCCTATATG
GAAGAGAGCA TGGGCATCGA GGAGGCCTTT AATAAGGGTA AGGAGCCGAT AAAGACATTC
ATGTTGGCGC AGACCCGCGT GACCGATCTC GATACCTTCA TTCAGATCTC CGGCTATCAG
AATATTAACT CTCCGGAAGA AGCGCCGATG AGTGTGATCA TTCCCTCATT TATCACCAGC
GAATTAAAAA CGGCCTTCCA GATTGGGTTT ATGCTGTTCG TCCCATTTCT CGTTCTGGAT
TTAGTGGTCG CCAGTATCTT GATGGCCATG GGTATGATGA TGCTCTCACC TATGATTGTC
TCACTTCCTT TTAAAATTAT GTTGTTTGTT CTCGTCGATG GTTGGAGCCT TGTGATGGGG
ACTCTAGCTA ATAGTTTTGG GACCTAG
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| Protein sequence | MKRILIFIAF SLLLISPEAF SQGGVLPAVT VTTGPQGETQ YSVTMQILLL MTSLSFLPAM
VIMLTSFTRI IVVLSILRQA IGLQQAPSNQ VLIGMSLFLT FFIMSPVFDK VYDDAVKPYM
EESMGIEEAF NKGKEPIKTF MLAQTRVTDL DTFIQISGYQ NINSPEEAPM SVIIPSFITS
ELKTAFQIGF MLFVPFLVLD LVVASILMAM GMMMLSPMIV SLPFKIMLFV LVDGWSLVMG
TLANSFGT
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