| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3015 |
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| Symbol | |
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| ID | 5610644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3645922 |
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| End bp | 3646695 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 640933952 |
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| Product | ABC-type polysaccharide/polyol phosphate export systems permease component-like protein |
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| Protein accession | YP_001474747 |
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| Protein GI | 157376147 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0998219 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000148494 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCATTTTT TTCAATACTG TTCTTTGATC CATGTTATGG CTCGCATGAA ATTAAAGTCA
AAAGCGAATA TGTTATTACT GAGTTATGTA TGGTGGGTAC TAGAGCCTCT ACTGTTCGTT
TTGATGTTTT ACTTCGTTTT TAAATTTCTG CTTAATCGCG GTCGTGAAGA CTTTTTCATA
TTTTTGATTA TCGGTAAAAT CCCATTTTTG TGGTTTTCTA AAAGTGTCAC ATCAGCAGCT
AACTCATTAA TTGAGAACCG AGGTTTGATA AACCAGAGGC CAATCCCTAA GTTTGTGTTT
CCGCTGGTCA ATGTACATGA AGCGGCGTAT CAGCAACTGG TTACATTTGC AGTATTGATC
TCATTTGTCA TATTTAATGG CTATCACGAC TTTGGTTTAT GGTGGCAATT AATTCCTCTC
ATTTTTTTGC AATACCTGCT TATTTGTGGC TTATCGAGTC TGTTTACTTT ATTCGTCACT
TATGCACCAG ACTTTAGAAT GATAGTGTCG ATGTTTATGA TGGGAATGAT GTTTTGCTCC
GGTATCTTTT GGAGTATAGG GGACATTGCA GATCCGCAAC TGCAGAAGAT TATACTGTTA
TTTAATCCTC TTGCCGTCAT TATTGATGGT TACAGACAAG TGTTGATGCA TGGACAACTG
CTTAACTGGA TGACATTTGC ACCAGCGCTA CTCATCTCTT TAGGGTTGAT ACTGACTGGT
TTTGGCGGTT TAAAGAAGTT TGATAGTCTG TTAACACGCA GGGTGTTCAT GTGA
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| Protein sequence | MHFFQYCSLI HVMARMKLKS KANMLLLSYV WWVLEPLLFV LMFYFVFKFL LNRGREDFFI
FLIIGKIPFL WFSKSVTSAA NSLIENRGLI NQRPIPKFVF PLVNVHEAAY QQLVTFAVLI
SFVIFNGYHD FGLWWQLIPL IFLQYLLICG LSSLFTLFVT YAPDFRMIVS MFMMGMMFCS
GIFWSIGDIA DPQLQKIILL FNPLAVIIDG YRQVLMHGQL LNWMTFAPAL LISLGLILTG
FGGLKKFDSL LTRRVFM
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