Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2837 |
Symbol | |
ID | 5613179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3429254 |
End bp | 3430255 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640933756 |
Product | beta-hexosaminidase |
Protein accession | YP_001474572 |
Protein GI | 157375972 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1472] Beta-glucosidase-related glycosidases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0312091 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000147131 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCTTGATC TATTATCGAC CCAAGCGTCA GAGGAGGAAC TGTCACAGCT TCAGCACCCT ATGGTCGGTG GCGTGATTTT ATTTAGTCGA AACTACTCCA ATCGAACCCA GCTTATCGCC TTAATTAAGC AAGTGCGATC CGTACGGCCT GATATTCTCA TCGCCGTCGA TCATGAAGGT GGCAGGGTAC AGAGATTCAG AGACGGTTTT ACCGCTATTC CAGCGATGGG GGATATATTG CCCATCGCCG GAAAAGACAT GGTGTTGGCA AAATCCTGGG CAGTAGAGCT TGGCTATTTG ATGGCTATTG AACTCCTTGC CTGTGATATC GACTTAAGTT TTGCGCCAGT ATTAGATTTG AATGGCATCA GCAAGGTCAT TGGGAAAAGA GCATTTGGTA GTGAGCCGGA TGTGGTTATC GAGTTGGCCG GTAGTTTTAT CGACGGCATG GAGCAGGCCG GCATGGCGGC AGTCGGTAAA CATTTTCCTG GCCACGGCAG CGTTGAAGCT GACTCTCATT TCGACCAAGC GGTGGATAAC CGAACCAGGC AGCAGATTGT CGAATCAGAT ATGCGGCCTT TTAAACAACT CATCGACCAG GAAAAATTGC ATGGAGTGAT GCCTGCTCAC GTTATCTATC CTAATATAGA TCCTAATCCT GCAGGTTTTT CCGGATATTG GTTGAAGCAG GTGTTGAGAA ATGAGCTTGC ATTTAAAGGC GTCATCTTTT CTGATGATCT TGGTATGGAA GGGGCTGGTG TCGTAGGGGG CTATAAAGCG CGTGCTCAGG CGGCGCTTGA TGCAGGCTGT AATATGATTT TACTCTGTAA TGATGCAGCC GGTGCGACTG AGGTGTTAAA CGAGTTAGTG TGGCCTGAAA CGCTTCCTGA GCGGCCTGCC AGTTTATTAA AACCCAGGTT AGATGTCGTT ACCAAGGCGT TAGAGGATGA TGCTAGATGG ACAAGAGCAA AAGAGATTGC CGGAAAGTTT CCAATTAATT AA
|
Protein sequence | MLDLLSTQAS EEELSQLQHP MVGGVILFSR NYSNRTQLIA LIKQVRSVRP DILIAVDHEG GRVQRFRDGF TAIPAMGDIL PIAGKDMVLA KSWAVELGYL MAIELLACDI DLSFAPVLDL NGISKVIGKR AFGSEPDVVI ELAGSFIDGM EQAGMAAVGK HFPGHGSVEA DSHFDQAVDN RTRQQIVESD MRPFKQLIDQ EKLHGVMPAH VIYPNIDPNP AGFSGYWLKQ VLRNELAFKG VIFSDDLGME GAGVVGGYKA RAQAALDAGC NMILLCNDAA GATEVLNELV WPETLPERPA SLLKPRLDVV TKALEDDARW TRAKEIAGKF PIN
|
| |