| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2766 |
|---|
| Symbol | |
|---|
| ID | 5612769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3335947 |
|---|
| End bp | 3336543 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933685 |
|---|
| Product | response regulator |
|---|
| Protein accession | YP_001474501 |
|---|
| Protein GI | 157375901 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3707] Response regulator with putative antiterminator output domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0580203 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATTT TCACTTTGTT CGATTCAACC TTTTGCCAAG GGCTTGAATC GCGTGGCCTG
ACACTGGCTA ACTATCTGTA TGCTTTGCAA CCAGTTCTTG AGGTGAGTGT AAACAGTGAG
CCTGATGAAA TCATTCCACT GACTTCATTG CGAGCCTTGG AAAGTATCTC TCTTTCCCCT
GAAGGTGATC AATTGCTGTT TTTCACAGCG AGTCTGACGG AGAAAGATAT CTGTTTCTTA
CTCAGGTTGT TGCGTTTTTC CGCGATCCCT TTGATAGTGA ACACTGCCCA TTGGGAGGAT
GCGGGGCTGG CGAGATTACT CGAGTGCGGA CGTGTTACTT TTGTTCCCGG AGAGCTGGAC
CACCTGAGAA TATTGAGCAT CATTCAGCTT TCCCGTCTGA GGTTTTCGCT TGCAACTATG
CAGGTAAATA AAGTGTTGGC GCTCGAGTCA TCTCTGGAAG CACAAAAGTT GTTGGCGAAG
GCAAAAGCTG AGCTTCAGCG TCACGGCTTG AGTGAGTCAG AGGCACATAA GACCTTGCAG
AGACAAGCTA TGGAGAAGGG CATCTCCATA GAAAAACTCG TTTATCAGTT ATCTTAA
|
|---|
| Protein sequence | MRIFTLFDST FCQGLESRGL TLANYLYALQ PVLEVSVNSE PDEIIPLTSL RALESISLSP
EGDQLLFFTA SLTEKDICFL LRLLRFSAIP LIVNTAHWED AGLARLLECG RVTFVPGELD
HLRILSIIQL SRLRFSLATM QVNKVLALES SLEAQKLLAK AKAELQRHGL SESEAHKTLQ
RQAMEKGISI EKLVYQLS
|
|---|
| |