| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2644 |
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| Symbol | yebU |
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| ID | 5612879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3199274 |
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| End bp | 3200710 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933563 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_001474379 |
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| Protein GI | 157375779 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0597695 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCAAC TAAATCAAGA TTTTATCAAG AGCATTGCTA AAGATATGCC TGCTCACCTC
TCAATGGATG ATTTTATCAG CTACAGCAGC AAACCTTTGC GACCGTCCAT TCGAATCAAT
ACCCTAAAAA TTTCATCCCA GGATTTCATT GCATTGATGG CTCCTAAAGG GTGGACACTC
GAGCCGATCC CCTGGTGCCA AGACGGCTTT TGGATCTCAC TAGACAGTGA CGTGCAGCTC
GGTAACACGG TAGAACACCT ACAGGGCCTG TTTTATATCC AGGAAGCAAG CTCTATGTTA
CCACCCATAG CGCTCTTTTC GACAAAAACA GACAAGGCTG AACACACCAT ACTCGATATG
GCATCGGCTC CCGGCTCTAA GACCACACAG ATAGCGGCAA TGATGGACAA CTCTGGCCTA
CTCATAGCTA ATGAATATTC ATCGAGCCGT GTGAAAGTAC TTCACGCCAA TGTGCTTAGA
ATGGGAGTCA GTAACACCGC CCTCACCCAC TTCGATGCCA GAGTATTCGG TGAATACCTG
TATGACCAAT TCGATGCTAT TTTACTCGAT GCTCCCTGTA GCGGCGAAGG CACCATTCGA
AAAGACCCCT TAGCACTCAA TAATTGGGGC TTAGCGGAAA ACAGCGCCAT CGCCGAAACC
CAAAAAGCAC TGCTTGAATC GGCCTTCCTC GCATTAAAAA CTGGCGGGAG TTTAGTCTAT
TCCACCTGCG CACTGAGCAA ATTGGAAAAC CAAGACGTGT GTGAACACCT CAGATCCACA
TTTCCTGAGG CGGTAGAGTT TGAATCCCTT GCCACTCTCT TCCCCGACGC AGATAAAGCC
TGTACGGATG AAGGTTTCCT TCACGTATGG CCACAAATTT ATGATAGTGA AGGCTTCTTC
ATCGCCAAGA TAACCAAAAC CTGCGATGTT GAAAGGCAAA AGCCTGAGCC GAAGAGACAG
AAAAATTTTC CGTTTACCCC CATATCCTCG AAAGTTGAGC TTGAACTGCG CCAGTATTTC
AAACAAACCT TCGACATCGA CATTCCCACC GATGACATGC TCATGGTGCG AGATCTGGAG
TATTGGTTGT TTCCGGCCGG TATGAAAACG TTGATCGGTA AAATGCGGTT TCAAAGAATT
GGCGTAAAAC TCGCGGATGG GTTGAAAAAA GGATTTAAGG CGAGGCATGA AGCCATCGTG
GCCTTAGCCG AAAAATCGAC AGGCTATGAA CTCTCCCAAG CGCAGGCCAT ACAATACCTG
ATGGGAAGAG ATATTCCCCT CGTTGATGGC GGTAAGCCAC AGGGAGAGCT GATAGTGACC
TATCATGGGT CTGCATTGGG TGTGGCAAAA CATTTGGGAA GTCGACTTAA AAACACTCTT
CCGAGAGATT TAGTGCGGGA TAAAATTGCC GATTCGGATG CCAGCACAAC AGCCTGA
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| Protein sequence | MVQLNQDFIK SIAKDMPAHL SMDDFISYSS KPLRPSIRIN TLKISSQDFI ALMAPKGWTL
EPIPWCQDGF WISLDSDVQL GNTVEHLQGL FYIQEASSML PPIALFSTKT DKAEHTILDM
ASAPGSKTTQ IAAMMDNSGL LIANEYSSSR VKVLHANVLR MGVSNTALTH FDARVFGEYL
YDQFDAILLD APCSGEGTIR KDPLALNNWG LAENSAIAET QKALLESAFL ALKTGGSLVY
STCALSKLEN QDVCEHLRST FPEAVEFESL ATLFPDADKA CTDEGFLHVW PQIYDSEGFF
IAKITKTCDV ERQKPEPKRQ KNFPFTPISS KVELELRQYF KQTFDIDIPT DDMLMVRDLE
YWLFPAGMKT LIGKMRFQRI GVKLADGLKK GFKARHEAIV ALAEKSTGYE LSQAQAIQYL
MGRDIPLVDG GKPQGELIVT YHGSALGVAK HLGSRLKNTL PRDLVRDKIA DSDASTTA
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