Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2577 |
Symbol | |
ID | 5610875 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3127305 |
End bp | 3127823 |
Gene Length | 519 bp |
Protein Length | 172 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640933496 |
Product | hypothetical protein |
Protein accession | YP_001474312 |
Protein GI | 157375712 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAGAG AACAAATAGC CGCTAGTCTT GAAGAGGCGT TCAGTAAATA TGGTTTCGCC GAGCCGAGCG TTGCTCAGCT AAAGACAGCG TGTAACGTAA GCCTGCGAAC TCTATACAAA TACTATCCAT CCAAGGAAGC GATGATAGTC GGTGCTCTGG AGTATCGTCA TCAAAGATAC CTCACTTTTC TGCTTAACGA GTCGCCATCC AATGGTGTTG AGTCTGCTTT GTATATTTTT AATAAACTTG AACAATGGAT GAAGGAATAT GCGCCACACG GTTGTCTGTC TATGAATGCT ATTGCAGCCT TTCCCGACAA TCCACTTATC AATAAGGCAG TTAAAGAACA TAAAGAGGAA GTTCGCCAGT TCTTAGGCCA GCAAAGCCAG AGAGAAGATC TTTCTACGGC TCTGTTTTTA CTGCATGAAG GCGTATCAAG CGCATGGCCC GTACTGGGTA AAGAGGCGAT AACATCGGCT CAAAAGGCGC TATTACAACT TTTAGAGGAA GATTCATGA
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Protein sequence | MLREQIAASL EEAFSKYGFA EPSVAQLKTA CNVSLRTLYK YYPSKEAMIV GALEYRHQRY LTFLLNESPS NGVESALYIF NKLEQWMKEY APHGCLSMNA IAAFPDNPLI NKAVKEHKEE VRQFLGQQSQ REDLSTALFL LHEGVSSAWP VLGKEAITSA QKALLQLLEE DS
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