| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2492 |
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| Symbol | |
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| ID | 5609894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3030699 |
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| End bp | 3033011 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933413 |
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| Product | vault protein inter-alpha-trypsin subunit |
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| Protein accession | YP_001474229 |
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| Protein GI | 157375629 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0368823 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.695275 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTG ATGTGGTATC GGCTACCAGT CAAGGAGCCC CCAACCGGGG GGCTCTCGGC
TTCCTCCTTC TTATAGGCGC ATTGCTGTTG CCATCGATGA ATGTGAAAGC ATCATTTGAT
GCCGAGCTCA GTCAGGGCAG CTTCGTCTAT CGAGTGGCAG ATCAGGACGG CGGATCGCAA
GTATCGATGT CGCTCCCCCT TGAAACTGAA GTTCAGATGA CGGTTTCGGG GTGGGTGAAT
CGGGTTAAGG TGAAACAGAC ATTTAAAAAT CTCAGCGGCG AATGGCTAAA TGGCAGCTAT
CTTTTTCCTC TTCCTAATGA AGCCGCGGTA GATGGTATGA AGTTACTCAT CGGCTCCCGA
GTCATAGAGG GGCAGATTAA GGAGCGGTTG GAGGCAAAGA AAATATATGA GCAGGCAAAG
AGTGCGGGTA AGCGAGCGAG CCTGGTCGAG CACAATCGCC CCAACATTTT TAAAACCTCT
GTTGCCAACC TAGGGCCCGA TGAGCTTTTA GTAGTGGAGA TAAGCTATCA GGAACTGGTG
GACTATGACG AGGGTGAGTT TAGCCTCAGG TTTCCTATGG TCGTTAATCC ACGATATTAC
CCTCAAGGCG GCAGTAAACA GCCTGATGAC TTTCAGAACC AAGGTTTTCA ATATCAGGAT
TTTCAGTACC GAGGTCTCAC CGGAGATGAG AGCTGGCTGG ATAAGTTATC TGCTATGGAA
GCATCGCTTC GTGGAGAAAG TTACGGAGTA AGAAGCCACA ATGCTCCTAC AGTTAACATT
CGGGTCAACC TCGATGCCGG GGTTGAACTC AGTGAGATCA CCAGCGCCTA TCACACCATC
GATAAAACGC CGCTGGATAA TACAGGTTAC CAGATCCACT TAGCGAGTCA GGTCGCGGCC
AACAGAGATT TTGTATTGCG CTGGAAACCA GTAGCGGGAA GTGAGCCAAC AGCTGCTGTA
TTTGCCCAAA AGGGACAAAC TTATTCCTCA TCATCGACAC AGAAAAACTC ATCAGAGCAA
CATGTAAAAT CCGATCCGGA ACTAAATGCA AAACCCGATG CTGACTATGC ACTGGTTATG
CTTTTGCCTC CGTCCCTTGA GAAGAGCCGA AATAGGGTTT CGAGAGAGTT GATATTAGTG
ATAGATACCT CCGGTTCTAT GTCGGGCAGC GCTATGGAAC AGGCAAAAAA GGCGATGAAG
TACGCATTGG CTGGATTAGG AAGTGATGAC ACGTTTAACG TTATCGAGTT TAACTCAAAG
GTGAGTTCAC TCTCAAAGGG GCCGATACCA GCCAGTACGA AGAATATTGA GATGGCGAAT
CGATTCGTTC ATTCGTTAAC TTCCGATGGT GGTACGGAGA TGGCACTGGC GCTCGAACAT
GCATTAGGAC AGGAGTCTGG TGGCTCATCA TGGCAAGAGA CTGGGTTACA GGGTAAAGAT
GAAGAATCGA CGAGTCGATT ACGGCAGGTC TTGTTTATGA CAGATGGCGC CGTGGGCAAT
GAAGCTGAGC TATTTAAGTT GATAAAATAT CGAATTGGCA AGAGTCGTCT TTTTACCCTT
GGTATAGGTT CTGCGCCAAA CTCTCACTTT ATGCAGAGGG CGGCCGAGTT TGGCAGAGGC
ACCTTCACCT ATATTGGTGA CTTAGATGAG GTACAAGAGA AGATCCAAGG GCTGCTATAT
AAAATTGAAC ATCCACAAAT TACCGACATT GAGCTCCATT ACACTGACGG AACCATTCCG
GATTTCTGGC CAGCGACCAT TCCTGATCTC TATGCCGAGG AACCTTTGCT GGTGGCAATA
AAAATGCCGT CGGACAAGTA CGCGGCATCG CAAGATAAAT TGGTGATTTC CGGCTCAATA
GCCGGTCGTT ATTGGCAAGA TGCAGTCTCG CTCGATAATA AAAAAACTGC CGCTGGGCTG
GATCTTATTT GGGCCAATAA ACAGATTGCA GCCCTTGATT TAAATAAAGA TGGCGTTAAT
AACAGCAGAG TGAAGCAACA GATCACCGCG CTGGCGCTTA ATTATCACCT GGTGAGCAGA
CATACCAGCT TGGTTGCGGT GGATATCACT CCCGTGAAGC ATTCATCGAT AATTTCCAAT
AATGCTGCCG TTTTACCATT AACGCCATTT GGTTGGAAAC CGCCTGTGGG CAGCTTACCT
CAGACTGGCA CAGACAGCCG TCTATTCATC ATGACTGGGC TGATTTTACT GTGTTTGTTG
TGTGTCTACA TGATGAGCTT TCGTATTGAA TTGCGTATGG AGATAGTGGA GCGATTGACT
GGAAAAAAGG TGGGTGAGCG TGATGCCTTA TGA
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| Protein sequence | MKIDVVSATS QGAPNRGALG FLLLIGALLL PSMNVKASFD AELSQGSFVY RVADQDGGSQ
VSMSLPLETE VQMTVSGWVN RVKVKQTFKN LSGEWLNGSY LFPLPNEAAV DGMKLLIGSR
VIEGQIKERL EAKKIYEQAK SAGKRASLVE HNRPNIFKTS VANLGPDELL VVEISYQELV
DYDEGEFSLR FPMVVNPRYY PQGGSKQPDD FQNQGFQYQD FQYRGLTGDE SWLDKLSAME
ASLRGESYGV RSHNAPTVNI RVNLDAGVEL SEITSAYHTI DKTPLDNTGY QIHLASQVAA
NRDFVLRWKP VAGSEPTAAV FAQKGQTYSS SSTQKNSSEQ HVKSDPELNA KPDADYALVM
LLPPSLEKSR NRVSRELILV IDTSGSMSGS AMEQAKKAMK YALAGLGSDD TFNVIEFNSK
VSSLSKGPIP ASTKNIEMAN RFVHSLTSDG GTEMALALEH ALGQESGGSS WQETGLQGKD
EESTSRLRQV LFMTDGAVGN EAELFKLIKY RIGKSRLFTL GIGSAPNSHF MQRAAEFGRG
TFTYIGDLDE VQEKIQGLLY KIEHPQITDI ELHYTDGTIP DFWPATIPDL YAEEPLLVAI
KMPSDKYAAS QDKLVISGSI AGRYWQDAVS LDNKKTAAGL DLIWANKQIA ALDLNKDGVN
NSRVKQQITA LALNYHLVSR HTSLVAVDIT PVKHSSIISN NAAVLPLTPF GWKPPVGSLP
QTGTDSRLFI MTGLILLCLL CVYMMSFRIE LRMEIVERLT GKKVGERDAL
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