| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2406 |
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| Symbol | |
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| ID | 5613465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2925750 |
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| End bp | 2926838 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933317 |
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| Product | putrescine-binding periplasmic protein precursor |
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| Protein accession | YP_001474143 |
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| Protein GI | 157375543 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.388567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00509094 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAACTC AAACAAAAAT ACTGTTAGCG ACATTAACAC TTTGTACCAC CTCGGTCTCG
GCGGCTGAAA ACACACTCAA CATATATAAC TGGTCCGATT ATATCAGTGA AGAAGCAATA
GCCTCATTTG AAGCCAAAAC CGGTATTGAG GTCAATTATG ATGTGTATGA TTCCCAGGAG
CTGGCAGAGA CAAAGCTGCT GGTAGGAAAA ACTGGGTATG ATCTTGTCGT ATCATCGGGC
TCTTTTCTGC AGCGTCAAAT AAAAGTGGGA GTATTTCAAC CCTTAGATAA GAGTCGCCTT
AAAAACTACC ATCACCTTGA CCCTAAGGTA TTAGATATTG TCGCTTCATT CGATGAAGGC
AACCAACATG CTATTCCCTA CATGTGGGGA ACGACAGGGA TTGGTTACAA CATAGATAAA
GTCAGTAAAA TTCTGGGAAA CAAGCCCGTC AACACCTGGG AACTCTTGTT TCAAGTCGAT
ATCGTATCTA AATTTACCGA TTGCGGTGTC GCCATGGTCG ATGCCCCGAG TGAAGTCGTC
AGCGCCATGC TCAAATACTT AGGCAAGAAC CCCAACTCTC AGGATTTAGC CGATCTTAAG
CTGGTTGAGG AGCATTTATT GAAAATACGC CCCTATATCA CCTACTTCCA TAGCTCCTCC
TATGTCACGG ATCTGGCCAG CGGCAACATC TGCCTCGCGA TGGGGTGGAG TGGTGATGTG
TTTATGGCAG CTAATCGCGC TATCGAAGCG AAAAATGGGA TTAACGTCAA CTATGTTATT
CCTCGCGAGG GAGCACAAGG CTGGGCGGAC ACCTTCAATA TCACCAGCGA TTCTAAAAAT
GTTGATGCGG CCTACGCCTT TCTCGACCAT ATCTTAGAGC CACAAGTAAT AGCCGGGATC
TCAAACTATG TTTGGTACGC CAATGCCAAC CAAGATGCAT TCGAGTATAT CGACACCGAT
ATCACCTCAC ACCCCGGGAT CTATCCGGAT AATAAGACGC GTAAAAACCT CTTTGCCGAT
AAGGGGCGCA CACTGAAATA TGAACGAGCG ATGAATCGAA TGTGGACACG GGTCAAGACA
GGTCTGTAA
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| Protein sequence | MKTQTKILLA TLTLCTTSVS AAENTLNIYN WSDYISEEAI ASFEAKTGIE VNYDVYDSQE
LAETKLLVGK TGYDLVVSSG SFLQRQIKVG VFQPLDKSRL KNYHHLDPKV LDIVASFDEG
NQHAIPYMWG TTGIGYNIDK VSKILGNKPV NTWELLFQVD IVSKFTDCGV AMVDAPSEVV
SAMLKYLGKN PNSQDLADLK LVEEHLLKIR PYITYFHSSS YVTDLASGNI CLAMGWSGDV
FMAANRAIEA KNGINVNYVI PREGAQGWAD TFNITSDSKN VDAAYAFLDH ILEPQVIAGI
SNYVWYANAN QDAFEYIDTD ITSHPGIYPD NKTRKNLFAD KGRTLKYERA MNRMWTRVKT
GL
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