| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2390 |
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| Symbol | |
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| ID | 5613055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2909924 |
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| End bp | 2911183 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933301 |
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| Product | Fmu (Sun) domain-containing protein |
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| Protein accession | YP_001474127 |
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| Protein GI | 157375527 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.416115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCACA CGTTTTTATT TCATGCATCT ACAACAGGCA ACTTCATGCT TAACTCTCCG
CTTTCACCTA GCTCGACAGA ATTGGTTATT AGTGTATTAG ATATGGTCTT ATCTGAAGGT
AAACCTTTAG ACAGAGCCTA TTCGGTACAC TTTTCAGGCC TACAACTTGC GCCATCAGAA
CAGGCCCGTA TCACCAAGGT TGCCGGAGAT ATCTTACGTA GATTGAACTT GTACTGTTTC
CTGTCCGATG TGAAACCCGA AGAGATGTCT CGTCTGGGTA CGCGTTTGAT AAATGCATGG
CACCTGTTTC ATGAGCTTGA ACTTCCTAAG CTGCAATATT CTCTGCCACT TGTTGAAGCC
GAATATTTTG CTCGTCTCGA AGAGGCTAAG AAGCAACCGG CACTTTGGGA TGGTTGTCCC
GAGTGGCTCG ATGAGATGGG TCAATCACAG CTTGGTGAAG CTTGGGCCAA AGAGCGTGCG
GCATTAAATA CGCAACCTAA GCGTTTTATT CGTACTAACT TATTAAAGTG TACCCGTGAA
GAGTTAGCCA AAAAATTACG CAACGAGCAG GTTCAAACCC AGGAAGTTGA AGGCGTAGAT
ACCGCGTTGG AGGTCACTTC TGACTCCGCC CTGTTCCGTA CCGAAAGCTT TAAAAAGGGT
TGGTTTGAAC AGCAAGATGC TGGCTCTCAG TTGGTTGCTG CCGCTGTCGA TGCAAAACCG
GGTATGCGTG TTATCGATGC CTGCGCCGGA GCGGGTGGTA AAACATTATC AATCGCATCT
CAAATGAAAG GCAAGGGCCG CTTATTAGCG ATGGATGTAG AACAGTGGAA GCTCGATAGC
CTCAAGCAAC GTGCACGACG TGCTAATGCC GATAATATCG AGACACGTAT CATTGCCAGC
AGCAAGACGA TTAAGCGCCT TAAACTCAGT GCCGACAGAG TTCTGCTCGA TGTACCTTGT
TCGGGACTGG GTGTACTTAA ACGTAACCCG GATGCTAAGT GGCGTGATAC GCCGGAGCGT
CTGCCAGTTT TGGTTGAGCT ACAAAAGCAT ATCTTGCAAA GCTACAGTCG TATGGTGAAA
GTTGGCGGCA TGTTGGTCTA CGCAACATGT TCAATTATGC CGGAAGAAAA CCGTAACCAG
GTAGATGCTT TTCTTGCTGA AAATGATCAT TTTAAGTTTA TCGAAGATGA GACTATTAGT
GTTGCGGATT CAGGTTTCGA TGGTTTTTAC TTAGCCAAAC TTGAGCGTAT TGCTGAATAG
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| Protein sequence | MIHTFLFHAS TTGNFMLNSP LSPSSTELVI SVLDMVLSEG KPLDRAYSVH FSGLQLAPSE
QARITKVAGD ILRRLNLYCF LSDVKPEEMS RLGTRLINAW HLFHELELPK LQYSLPLVEA
EYFARLEEAK KQPALWDGCP EWLDEMGQSQ LGEAWAKERA ALNTQPKRFI RTNLLKCTRE
ELAKKLRNEQ VQTQEVEGVD TALEVTSDSA LFRTESFKKG WFEQQDAGSQ LVAAAVDAKP
GMRVIDACAG AGGKTLSIAS QMKGKGRLLA MDVEQWKLDS LKQRARRANA DNIETRIIAS
SKTIKRLKLS ADRVLLDVPC SGLGVLKRNP DAKWRDTPER LPVLVELQKH ILQSYSRMVK
VGGMLVYATC SIMPEENRNQ VDAFLAENDH FKFIEDETIS VADSGFDGFY LAKLERIAE
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