Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2370 |
Symbol | |
ID | 5611890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2883124 |
End bp | 2884509 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640933281 |
Product | hypothetical protein |
Protein accession | YP_001474107 |
Protein GI | 157375507 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4961] Flp pilus assembly protein TadG |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.217776 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.232685 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGGAAA ATAGACAGTT TCTATTTCAT GGCATGGTGA ACAAGATGAA TATAAGACCA TATCGCAAGC AAGGTGGAGC TATTCTGGTC ATGTTTACTA TTGGCCTGTT TTCATTGATC GCTGTGGCTG CATTGGCACT CGATGGCGGA CACCTGTTAT TGAATAAGGG GCGTTTACAA AATGCGGTCG ATGCGTCAGC CCTGTATGCT GCAAAAGAGC TACAGGATGG TGCGAGCTTG TATGAAGCCA GAGAAGCGGC TACTACTTTG CTATTACAAA ACCTTCAATA TCAGGAAAAC GGGGAACTCA ATAGCAGTAT CGATCTCTCT GCACCCGATT ACAACTCAAC TCAGGTAGCA GCCAATCTGT TTATTGAGTT CTCAGAGTGG CCAGATCCTT TCTCGCCAAT ATTGGTGGAG GGCAGTGAGT ATGTTCGGAT TAGAATTGAA AATGTCGGGT TAACAAATTT TCTCGCTCAA ATCATGAATT TTGATAAATC GGTGAGAGCA TCTGCCATCG CGGGACGTAG TACGGACATC GAGTGCCTCA ACAAAGCTGT TCCTATGATG GTGTGCGCAT TAAATGAAGA TGAAGATGAT GATTTCGGTT TTAGTCCAGG AACTGTCCAT ATTATGAAGA TTGGCTCTAA CGCAGATAGT CCTATTGGGC CTGGAAACTT TCAGCTTCTG CGGTTAGATG GTAATTCAGG TGGTGCCGAT ATTCGTAGGG CCCTAGCAGG GGACTTTACT CTCGGTCTGT GTGTGGAGGA TGGAGATGAA ATTCCAACTG AGCCGGGCAA CACTGTGGGA CCCGTGGTAC AGGGGTTAAA TACACGTTTT GGAACCGATA AAGGTGGTGG AAATATTAGC GAGTTCAAGA GGGATTTCGA TGCCTGTCAG GGTGATAGAG TTTTAGTTAA TGATGACGGT GATATCGTTG TCCAGCTTGA TGAGGCTGGG GACCCTGTAC TCGATGCTGA TGGGCATACT ATTCCAGTCG ACAGTGCGGG AGCCATAATC GATTATTATA CTCATGCCGA ATACAGCCCA GCTTCCCCGC TTCTTCCTCC AACCAGCTGT CCTACAGGAT TTTCTGGTGA TATCTTGTCT AAACCCTCAT CAATAGCGTC GACTGGACGT CGTGAATTCC CCATTGTTAT CGGTATTTGC GATGGTGTTA CCAATGGAGC TAACACGATC ACGACTCTGG GCACCGGTTG CTTCTTTTTG ACACAAGAAG TGTCACAAAA GGGAAATGAG GCCCATGTGA TTGGCGAGTT TCTCAGTGTC TGTTCCGGTT CAGGCAGTGC TTCACTCGAT CCCACCTACG AGAGCAAAGT ATCAACAGTG GTCTTATACC GAGATCCCGA TAGTCCGGAC TCATAG
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Protein sequence | MWENRQFLFH GMVNKMNIRP YRKQGGAILV MFTIGLFSLI AVAALALDGG HLLLNKGRLQ NAVDASALYA AKELQDGASL YEAREAATTL LLQNLQYQEN GELNSSIDLS APDYNSTQVA ANLFIEFSEW PDPFSPILVE GSEYVRIRIE NVGLTNFLAQ IMNFDKSVRA SAIAGRSTDI ECLNKAVPMM VCALNEDEDD DFGFSPGTVH IMKIGSNADS PIGPGNFQLL RLDGNSGGAD IRRALAGDFT LGLCVEDGDE IPTEPGNTVG PVVQGLNTRF GTDKGGGNIS EFKRDFDACQ GDRVLVNDDG DIVVQLDEAG DPVLDADGHT IPVDSAGAII DYYTHAEYSP ASPLLPPTSC PTGFSGDILS KPSSIASTGR REFPIVIGIC DGVTNGANTI TTLGTGCFFL TQEVSQKGNE AHVIGEFLSV CSGSGSASLD PTYESKVSTV VLYRDPDSPD S
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