| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2356 |
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| Symbol | |
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| ID | 5610615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2866720 |
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| End bp | 2868048 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933267 |
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| Product | membrane protein-like protein |
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| Protein accession | YP_001474093 |
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| Protein GI | 157375493 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4872] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00121464 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000680633 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGGTTAA TCCAGCTGTT TAAAAAGGAG TTGTCACACG AAGCTCGTAC CTGGGTACGT
GATGAGCTTG TGTCGGAGCA GCAGGCTAAT TCGATATTGG CCCGCTACGG CACGAGCCTC
AATGATGACA CCGATAAAAA TTCCTTCGGT TATTACCTGC TGATGTCATT GGGAGTGTTG
TTTATTGGTT TAGCGCTGAT ACTGATCGTT TCACACAACT GGGATGAGAT CCCAAGAAGC
ATACGTACAG GAAGTTTACT GTTATTAACC TTGGTGACTA ACGCCGTCGG TATTAAACTA
TTTTTATCGA AGCGAATACG CGCCGGCATC ATCTGGTTAC TCTTTGGCGG CATGAGTTAT
GGCGCCAGCA TCATGCTCAT CGCACAGATC TATCACCTGG GAGAACACTT CCCTGATGGC
ATATTCTGGT GGGCATTGGG TATATTACCT TTGGTGGTCT TTACTCAGAG TCGACTTTTG
GCGCTGTTGT CCTTGAGCTT GGCCAGTATC TGGCTAGTGG TCGAATCGGG GGAAGACTTT
TTCCCGACGC TTTATCCGAT ATTTATATCA GTGACACTTT GGTTAACCCT GTTTCAGGCT
CGCTCCCGTT TACTGTTCCT GTCCTGTGTT GTGGGTTTAC TTGTCTGGAT AAATTTAGGT
CTGGCTTGGA TCATGGGCAG TGGCTATCAC TTCGATCCCG TGGCAGAGCA ATTACCCTTT
TCTTTAGGCC TGGGGCTTAT CATAAATGGT GTTGCATGGT GGCTAATGCG CGCTGATAAG
AGTGACTGGC GAGAGTACGG ACTGGTGGTA CACATCTGGT TACTCAGGGC GGCCATTATT
ACCCTGTTAG TATTCAGCTT CGAAGGCGTG TGGGAAGAGT ACCCGAGCGA CCAGAGTTGG
TTGTCTGTGA TAAGTGTTAT CTTCATCCTA GTGTCGGGGA TGCTTGCATT TCGGCTATCT
CGCGCAAGTG GTCGATACGC ATCTCTGCCG ACGTTGATGC TGACCGGCTA TCTGACGTTC
TCATTTTATC TGGTGAGCGC GTTTAGCCAT ATGGAATTTA TCTCAGCCAT CGCCACTAAC
TTGATGCTGC TCCTGATGGG GATCCTCTTG ATACGAAGAG GTATCGATCA ATCCGAAACC
CACTATTTCT ATACCGGCAT TGTCGTCCTG TTACTGACGG CATTTATACG ATATTTCGAT
CTTATAGGAG ATTACATAGG TGGAGCTGTT CTGTTTCTCG TCGCGGCCGG TATCTTGATG
GCCGCGGCAA AATACTGGAA GCATCATGTC ACCCTTATCG CTTTAAAACA GGGAGGTCAT
AGCGAATGA
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| Protein sequence | MRLIQLFKKE LSHEARTWVR DELVSEQQAN SILARYGTSL NDDTDKNSFG YYLLMSLGVL
FIGLALILIV SHNWDEIPRS IRTGSLLLLT LVTNAVGIKL FLSKRIRAGI IWLLFGGMSY
GASIMLIAQI YHLGEHFPDG IFWWALGILP LVVFTQSRLL ALLSLSLASI WLVVESGEDF
FPTLYPIFIS VTLWLTLFQA RSRLLFLSCV VGLLVWINLG LAWIMGSGYH FDPVAEQLPF
SLGLGLIING VAWWLMRADK SDWREYGLVV HIWLLRAAII TLLVFSFEGV WEEYPSDQSW
LSVISVIFIL VSGMLAFRLS RASGRYASLP TLMLTGYLTF SFYLVSAFSH MEFISAIATN
LMLLLMGILL IRRGIDQSET HYFYTGIVVL LLTAFIRYFD LIGDYIGGAV LFLVAAGILM
AAAKYWKHHV TLIALKQGGH SE
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