Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2285 |
Symbol | |
ID | 5611514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2767589 |
End bp | 2768875 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640933195 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001474022 |
Protein GI | 157375422 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00134622 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATGGAA CTATGCCTCA TTTTCCACGC AGCGCTCAGA TTAACCCACT CGCTAAATTT CTATTCAGTA ACTTTAAACG CCCCTCAATG GGATTCGCTA TTTTACTTGG CTCGCTGGCA GGTATCAGCG GATGTGAAGA GGTGGCACCG ACAATCATTC CTAAAGCAGT GGTCGTCGAG CAGGTGTCAA CGGCCACCGT TCCTCTGTAT GGTAATTATA TCGGCATCAC TAAAGCCTCA TTGGATGTTG AGGTGAGGGC TCGGGTAAAC GGTTTTGTCG AAGATAAGAG TTTCATCGAA GGAAGTGGAG TAAAAGAGGG CTCGGTGCTC TATCGCATCG ACGATCGTCC CTATGTTGCT GTGGTAAACC GCTTAAAGGC AAATATGGAG TCTCAGCAGT CGGTATTGGA TAAGGCTCAG CGCGATGTTG AGCGATTAAA ACCTCTCTAT GAGCAAGATG CAGCCAGCCA ACTCGATTTC GATAATGCAC TGTCTTTGTT ATCGCAAGCC AAGTCCAGTT TAGCTGCCAG TAAAGCACAA TTGGAAGAGG CGCAGCTCGA ACTCAGTTAC ACCTCGATAC GTTCACCTAT CAGCGGCTTA GTCAGTCGCT CCGAGGTGGA CATCGGTGCC TTGGTAGGAA GCAGTGGCCA GTCATTGTTA ACCCGGGTCA AGCAGGTCGA TCCCATCTAC GTGACCTTCA ATATGTCGGC ACTCGATTAC CTGAACGCAA GGCGACGTAT GACGAGTTAT TCAGAGAAAA AGGAGGCCGA GTCAGAGGGT AAGGCAGTCG AAGGGTTTGT TACCATCACG CTCCCCGATA ACAGTGAGTA TCGCTATTTG GGTGATGTAC GCTTTACCGA CCCGTCAGTA AATCCAGAAA CGGGCACCTT TCAGGTTCGC GCCGAACTAC CTAACCCTGA TAAAGAGCTG CTTCCCGGTC AATACACTAA TGTGCGCATC AAGCTCAATG AAGTGAATAA TGCCATCGTC ATTCCTCAAA AAGCCACTCA AGTTGAGCAA GGTGGCGTGT ATGTGATGGT TGTCCTGCCC GATAACAAGG TCGAGCGACG TTTTATCGTC ATCGATCATC AGGGACCCAT GGGGGTCGTG GTACAAAGTG GGTTAAAGGC CGGAGAGTTA GTCATAATCG AAGGTATGCA TAGAGTCAGA CACGGCCAAA TTGCCGAGCC GTTAACGGCA GAGCAATATC ATAAGAAAGA AGATTCAAAA GAGAAACAGC AGGCGCTTAA ACAACAAGAG TTAGAGCAGA TACAGGAGCA AGAATAA
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Protein sequence | MDGTMPHFPR SAQINPLAKF LFSNFKRPSM GFAILLGSLA GISGCEEVAP TIIPKAVVVE QVSTATVPLY GNYIGITKAS LDVEVRARVN GFVEDKSFIE GSGVKEGSVL YRIDDRPYVA VVNRLKANME SQQSVLDKAQ RDVERLKPLY EQDAASQLDF DNALSLLSQA KSSLAASKAQ LEEAQLELSY TSIRSPISGL VSRSEVDIGA LVGSSGQSLL TRVKQVDPIY VTFNMSALDY LNARRRMTSY SEKKEAESEG KAVEGFVTIT LPDNSEYRYL GDVRFTDPSV NPETGTFQVR AELPNPDKEL LPGQYTNVRI KLNEVNNAIV IPQKATQVEQ GGVYVMVVLP DNKVERRFIV IDHQGPMGVV VQSGLKAGEL VIIEGMHRVR HGQIAEPLTA EQYHKKEDSK EKQQALKQQE LEQIQEQE
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