| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1996 |
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| Symbol | |
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| ID | 5612846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2413963 |
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| End bp | 2414892 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932882 |
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| Product | HTH-type transcriptional regulator XapR |
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| Protein accession | YP_001473733 |
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| Protein GI | 157375133 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.376345 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000153668 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATATTA ATGAAAATGT ACTAAATGGG CGTATAACAT TGAAAATGCT TCGTTACTTT
TATGCTGTGT CTCAATGTAT GCATTTTGGA CAAGCCGCAG AACAGCTTAA TATCTCAAAA
TCGCCCTTGA GTGCTCAAAT AAAAGAGCTG GAGTCTGTGC TGGATGTGAT CTTGTTTGAG
CGTACGACCC GCCATGTTCA GCTCACTGAA GTTGGTCTGT TATTGCAGCA GGAGTGTGCA
CTACTGTTTG AACTGTTTCG TGACTCGATC AATAAGGTGA CTCAGGCTGG CCGGGAGCTG
GATAACACGA TCAACATAGG GTTAATGAGC TCGATATTTT GGGCCGGTTT CGGGGCAGCC
CTGAGAGAGT TCAAAAAGAG TTACCCGGAA TATACCTTTA ATTTTATTGA GTTGGCGCCA
CAGAAGCAGA AACAAGCGTT AATCGAGCAT CGTATCGATA TCGGCTTGGC TCGATTTGCT
GATACACAAA ATATTCACCC ACTCAGTGCA AAACTTTTAT ACGCAGAACC CATGTGTGTA
TTGGTGTCCG ATGAGCACCC ATTGAAAAGG AAACAAAGTC TCAGTTTGGA TGAGCTTATT
AATGAAGAGT TTGTCTTTAT TGACCGTACA AACTCTGCAT CCACCGATAT GATTATTGAG
GTACTTTTAG AGTCTGGCTT TTACCCTAAG GTGACTCAGG AGGTCATTGA ACCGACGACG
TTAATGGCGG TTGTGGCAAC GAGCACTATG GTGTCGATTG TTCCTCAAAG TTACCGTCAA
CATCAATGGC AAAATGTGTG TTTTATTCCG TTAAAAGAGA CCATTTCAGC GGATATTTAT
GCGATTTATC ACAGCGGGTC CGCAAGAGAG TCCGTCAATG CATTTTTAAC CGCGATACCT
GGTTTACTCA GTCAACAAAA TATCAGCTAG
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| Protein sequence | MDINENVLNG RITLKMLRYF YAVSQCMHFG QAAEQLNISK SPLSAQIKEL ESVLDVILFE
RTTRHVQLTE VGLLLQQECA LLFELFRDSI NKVTQAGREL DNTINIGLMS SIFWAGFGAA
LREFKKSYPE YTFNFIELAP QKQKQALIEH RIDIGLARFA DTQNIHPLSA KLLYAEPMCV
LVSDEHPLKR KQSLSLDELI NEEFVFIDRT NSASTDMIIE VLLESGFYPK VTQEVIEPTT
LMAVVATSTM VSIVPQSYRQ HQWQNVCFIP LKETISADIY AIYHSGSARE SVNAFLTAIP
GLLSQQNIS
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