| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1973 |
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| Symbol | |
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| ID | 5612486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2383623 |
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| End bp | 2384891 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640932857 |
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| Product | histidine kinase |
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| Protein accession | YP_001473710 |
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| Protein GI | 157375110 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.73664 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTA AACCGAGTAT AAAGGTCTCA TTCCTTATCA CCATGTTGTT ACTGGGTGCA
GGGGTTTCAA CCATGTATTC GGGTCTTATG TTTCACTATT TTATTAAGGG GCTTAACGTT
GCTACTCAGG ACATCATGAA GCAGATAGGT AATATCAGAA CAATACCAGA CAAGCAACCC
GTAGCGGGAC AATTTTATGT TTCCGAGTTC TGGAATGATG TACCTGAACA TATAAAAATA
AAATTCGACT CCATTCCTAC TATTGAAGAA GGATTAGCTG TCGAAGCAGA AAAGACTCTA
ACTGGCTATC CAACTGCGAT ATTTTTTTTA ATGCAAGTTA AGAATAATTA TGGTGATAAG
AGGTTTGTTT ATAGAGTCGT CTATAATACA GACCCTATGG TAAAAGAAAT GGAAAATATT
CATATTGACA GTATCAATAT TATCCTCATG ATATTTGTTT CCACTATATT TATTTTTTAT
TTGTTTACTC TATTCATTTT TAGGCGGATA TCCAGACCAG TAGAAAAACT AGGTAACTGG
GCTCAGTCTC TTAATGAGAA AAGCCTTGAT GAGCCTCAGC CAACTTTTGA ATACAAAGAG
CTAAATCAGC TAGCTGAACT GATCCATAAA AGTCTGAATT CAGTCAAAGA AGTCCTTAAC
CGAGAACATG ATTTTCTCCG ATATGCCAGC CATGAGTTAC GTACACCCAT TGCTGTTATG
AGAACAAACA TTGAGCTGCT GACTAAAATG AATCGGGTCG AAGGGGCCAG TGACAAGCAG
GTTACCGTAT TAAAGCGAAT AGATCGGGCT AGCATGACCA TAGGACATTT AACTGAGGTG
TTACTATGGT TAGGTCGAGA TGATAGCTCT GAGCTAGATA CTCAAGACCT TGATTTAGAT
AAACTTGTCA GCGAAATATC AGCTGAGCTA AAGTATTTAC TTAACGGCAA ACCTGTCAAC
GTACTACTGA CAACCGAAGC AAAGCGGCTT AAATTACCTA CAACCGTTTG CCGTATTGTC
TTAGCTAACT TAATTAGAAA TGCTTATCAA CATACACAAA GTGGCATTGT TGATATTAGG
CAAATTGGTG ATCAGATTAT TATTGAGAAT ACCAGTGATG AGGATGAAAC TAACTCGGTG
CAAGGTGAAT TAGGTTTTGG TCTTGGTTTG CAACTGACTC AAAAGCTGAT AAAGAAATTT
GGCTGGCAGT ATTCATCTCA GACCACTCAA GATGAAAGAA ACCATGTATC AGTTGTCATT
TTTTCATAA
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| Protein sequence | MKIKPSIKVS FLITMLLLGA GVSTMYSGLM FHYFIKGLNV ATQDIMKQIG NIRTIPDKQP
VAGQFYVSEF WNDVPEHIKI KFDSIPTIEE GLAVEAEKTL TGYPTAIFFL MQVKNNYGDK
RFVYRVVYNT DPMVKEMENI HIDSINIILM IFVSTIFIFY LFTLFIFRRI SRPVEKLGNW
AQSLNEKSLD EPQPTFEYKE LNQLAELIHK SLNSVKEVLN REHDFLRYAS HELRTPIAVM
RTNIELLTKM NRVEGASDKQ VTVLKRIDRA SMTIGHLTEV LLWLGRDDSS ELDTQDLDLD
KLVSEISAEL KYLLNGKPVN VLLTTEAKRL KLPTTVCRIV LANLIRNAYQ HTQSGIVDIR
QIGDQIIIEN TSDEDETNSV QGELGFGLGL QLTQKLIKKF GWQYSSQTTQ DERNHVSVVI
FS
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