| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1950 |
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| Symbol | |
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| ID | 5610342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2352917 |
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| End bp | 2353855 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640932834 |
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| Product | hypothetical protein |
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| Protein accession | YP_001473687 |
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| Protein GI | 157375087 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00445675 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTGGCACC TTTCTCAACA TTTAAAAAAA GTAATTCCAA AACTCGTTGA AGGGAAATTG
TTAGCAGAAT GGAAACAGGT AGAAGAGCTA ATTGATCAGG ATGTTGGTTT TGAAGATGCT
ATGGCATCAT TAAAACAAGG TAGTGATTTG GTTCCTTTTA TTGTTTCGGA GACGACCAGA
CTTATAGGTA AAGATGAGAA ATCAATAATT GAAGCTGTTG TTCTACAAGA AAAACAATTA
TCGTTTTCTC TTTTGTTAAA TCACCTATTA CACAATCAAA ATGAACTAAT TATTGTTACG
CCAAATTATG ATCGCCTCAT AGAGTTAGCC TGTGAATCAG TTGGCCTCGA TATAATTACT
GGTTTCAATG GTTATTACTG TGGTACACAT GACCCTAACG GCGAAAAAGA CAAAATTTCA
GTTATCGAAA GAAAAAGAAA TTTAAGAGGT GGTTCTGGGG TTAGAGTTTC AGTAAAAAAG
CATGCAAAAA TATTTAAACC TCATGGAAGC CTAGATTGGT ATGAAATCAA TGGGAATATT
ATAAGGTTGC CTTACGAAAG TAGTGCGCGA AGATTAATTA TTACTCCGGG TACAAGCAAG
TTTAGAGAAG GCTACCAACA CCCATTTGAC TATCACCGAG AATTAGCAAA TAGATATATT
CAAGAAACCA AGTCGATATT GATTATTGGA TACGGATTTA ATGATGAGCA ACTTGAGGTT
CATTTGTTAA ATAAGCTTCG TGAAGGCGTT CCTGCTTTAG TTATTACCAA GGTGCTAACA
CCTAAAGCAA TAAGAATCTG TGACAGTCTA AATAACGTTA CCTTGGTTTC AGTTGGTAGA
AACGATAACG AGACCAAAAT CAGAATCGGT GGGGTTGAAA CTCTTCACGA TGGCAATTGG
TGGTCACTAA ATGAATTTAT AAATGGAGTT TTAAGATGA
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| Protein sequence | MWHLSQHLKK VIPKLVEGKL LAEWKQVEEL IDQDVGFEDA MASLKQGSDL VPFIVSETTR
LIGKDEKSII EAVVLQEKQL SFSLLLNHLL HNQNELIIVT PNYDRLIELA CESVGLDIIT
GFNGYYCGTH DPNGEKDKIS VIERKRNLRG GSGVRVSVKK HAKIFKPHGS LDWYEINGNI
IRLPYESSAR RLIITPGTSK FREGYQHPFD YHRELANRYI QETKSILIIG YGFNDEQLEV
HLLNKLREGV PALVITKVLT PKAIRICDSL NNVTLVSVGR NDNETKIRIG GVETLHDGNW
WSLNEFINGV LR
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