| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1910 |
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| Symbol | |
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| ID | 5611158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2295871 |
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| End bp | 2296641 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932796 |
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| Product | amino acid ABC transporter periplasmic protein |
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| Protein accession | YP_001473649 |
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| Protein GI | 157375049 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0380327 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACAAAC TTCATGTTCT TCTATTTCTG ATGATCAATC TGTTATTGCC AGCAGAGGGA
GCTGAGCTTA AGTTTGTCAC TCATGACTTT CCTCCTTTTA GTTATGAAAG TGGCGGGACC
CTATCGGGAG CGGCTATCGA TATTGTGCGT CAAACATGCA GCGAGATAGA GATAAGTTGT
CCCATCGAAC TCTTACCCTG GAAACGATCG CAATTTAAAG TCAGGCGGGG GCATGTGCAA
GCAATGCTGG TGATAGGATG GAATAATAAA CGAGCTCAAT GGCTATCTTT TTCACCTCCA
CTTTTAAAAA CTCAGTATGG ATTCTTCGTT AACAGATCTA ACCCGCTAGA TTATCTGTCA
CTCTCAGACC TAGCCGGGGC TAGAGTCGGT GTATTGGAAT CTTCTAATAC CTTTAGCCAT
CTAACTAAAA TCCGTCAGCA GATGATTGAG TCAAACCTTA AACCTATCAG TATTCAGGGG
ATCCATGACA ATAATCTGGT GTTTAAGATG CTAGATAATG AAGGTCGAAA CATAGAGATG
ATCTACTCCA ATAGAGATGT CGGTAATACA TTAATTGTTA ATAATAATTT GAAAAATGTT
CGTTATGCCG GCCCGAATGA AGAGTTGTAC TATTATATCG GCTTTGGCCG TAAGCATGCC
GACAAGGAGC TGGTAGAGCG CTTCAATAAC GGTTTTATGA AGTTACAACA GGCAGGCGTC
ATTCAAGATA TTTTAGCCCA ATACAATCTG GAGGGAGTTG AGCCCGATTG A
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| Protein sequence | MNKLHVLLFL MINLLLPAEG AELKFVTHDF PPFSYESGGT LSGAAIDIVR QTCSEIEISC
PIELLPWKRS QFKVRRGHVQ AMLVIGWNNK RAQWLSFSPP LLKTQYGFFV NRSNPLDYLS
LSDLAGARVG VLESSNTFSH LTKIRQQMIE SNLKPISIQG IHDNNLVFKM LDNEGRNIEM
IYSNRDVGNT LIVNNNLKNV RYAGPNEELY YYIGFGRKHA DKELVERFNN GFMKLQQAGV
IQDILAQYNL EGVEPD
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