Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1872 |
Symbol | |
ID | 5609726 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2257426 |
End bp | 2260485 |
Gene Length | 3060 bp |
Protein Length | 1019 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932758 |
Product | D-lactate dehydrogenase (cytochrome) |
Protein accession | YP_001473611 |
Protein GI | 157375011 |
COG category | [C] Energy production and conversion |
COG ID | [COG0247] Fe-S oxidoreductase [COG0277] FAD/FMN-containing dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000561674 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTTACCTA TCGATAAGTT ACCAAAGTTA TCTCATGAAC AAACGCTAGA GCCCGTATAT CTTGCCTTCC TGGCAGCGCT TGAGCAAAGT GATTTCACTG GTGATATCGA TAAACGCTAC AGTGCGCGTT TAGCGCAGGC GACAGATAAC TCAGTGTATC AATTCCTTCC TCAAGCCGTT ATCTACCCCA GAAGTCAGAA AGATGTGCGT TTAGTACTTA TGCTGGCGAC CAGTGCTGAA TTTTCGCAAG TGGTATTCAG TGCCCGTGGT GGCGGTACAG GAACCAATGG CCAGGCGTTG ACTCATGGAT TAGTCCTGGA CCTGTCTCGA TATTTGAATA AGGTCATAGA AATTAACCCT GAGGAAGCGT GGGTTAGGGT CGAAGCCGGT GTGGTCAAAG ATGCGCTTAA TGACGCTTTG AGACCCCATG GATATTTCTT CAGTCCCGAT CTCTCCACAT CAAATAGGGC GACGATGGGG GGGATGGTTA ATACCGATGC CTCGGGAGCC GGTTCACTGG TTTATGGCAA AACCTCAGAT CATGTTATCG GCCTCTCCAG TGTGCTATAT GATGGTAGTG TGCTCGATAC TTATTCAATC ACGCCCAAGG AACTCGAGAA TATTGATGCC GTGACATCTA ACCCTCTCGG TCAAACCTTG CTGACGTCGA TAGCTAATAT TTGCAGTGAC AAACGTCCAC TCATTGAATC CAGATTTCCA AAACTTAATC GATTTTTAAC GGGTTACGAC CTTAAGAATG TCTGGAATGA TGAGTTAACT GAATTTAACC TGTCGAGAAT ATTGACTGGC TCTGAAGGTA CGCTTGCCGT TATTACCGAA GCTAAATTGA ATATTACACC GCTTCCTTCG GTGCGAATGA TGGTTAACAT CAAGTACAAC TCTTTCGAAT CGGCGCTGCG TCATGCCCCA GAGCTCGTGA AAGCCAAAGC GACCGTTGTC GAAACGATAG ACTCGAAAGT CCTTAATCTG GCGCAACAGG ACATCATCTG GCACTCCGTT TCTGAGCTGA TAAAAGATGT TCCCGGCAGT GTTATCGATG GACTCAATAT GGTGGAGTTT GCCGGCGAGC AGGAGGAGGT CGAGGCTAAA GTCGCTGCAT TAACCTCAGC ATTAGAGACA CAAATTGATG AAAGCGCCGG TGGGCTGCTC GGCTATCAGG TCACCAATGA TAAAAAGAGC ATCAATACGA TCTACGCCAT GCGTAAGAAA GCCGTTGGCT TACTTGGCGC GGCTAAAGGA CGTAGAAAAC CGCTGGCCTT TGCAGAAGAT ACGGCCGTAC CCCCTGAAAA ACTCGCCGAC TTCATCATGG AGTTCAGAGC CTTACTCGAC AGTCATCAGC TTCAATATGG TATGTTTGGT CATGTTGACG CCGGCGTACT TCATGTCAGA CCTGCACTGG ATATGTGTGA TATTGATGAT GAAAGGTTGC TTAAAACCGT TTCGGACCAA GTGGCTGAGC TTACATTAAA ATATGGCGGT TTGATGTGGG GAGAGCACGG TAAAGGCGTG CGTGGTGAAT ATGGTCCCTC GGTCTTTGGT GAAGAGCTGT ACGGTGTTCT GGAAGAGGTT AAAGGGTTGT TTGACCCTAA GAATAAATTA AATCCCGGTA AGCTGGTGGC TCCTAAGGGG ACAGGTGCAC TGATTTATAA TGTCGATAGT GTTAAACGCG GCAGTTTCGA TCGCCAAATT CCCATGGAAA CCAGAGAGGC TTTCCCTGAT GTGATGAACT GCAACGGCAA TGGGCTTTGT TTCAACTACA GTGCCTATTC ACCCATGTGT CCATCTTTTA AAGTTACAGG GGATCGGGTT CAGTCTCCAA AAGGTCGAGC GGGCTTGATG CGAGAATGGT TACGCTTACT CGAATCCGAA GGCGTCGATG TCGACGCGCT TGCCAAATCC AAGCCCCTGG GCTGGTTGCA GCGCACTCAA AACACATTAA AAGCGAGCCG TGAGTATGAT TATTCACATG AAGTGATGGA GTCATTAAAA GGCTGTCTGG CCTGTAAGGC CTGCACATCT CAGTGTCCGG TTAAGGTCGA TGTACCTAAG TTCAGGGCTC AGTTCTTTAA TATCTATTAT CAAAGGTATC TGCGCCCGGT GAAAGACTAT CTCGTCGCGG GAATTGAAGA GAGCTTGCCG TTAATGGCAA TAGCTCCAAG ATTAACCAAT GCCGTTTCTC AGAACCCGTT AAGTCAGTGG GTGATAAAGA GGTCTTTGGG TTATGTGGAT GCTCCGGCAC TATCGATACC GACACTGAAA CAACGTCTCG ATGGCCACGC CTGTCGTGGT TATGATCTCG AAGCGCTGCA GAATATCCCC CAGGGTGAGC GCCAAAACTA TGTGTTGGTG GTACAAGATC CCTTTAATAG CTTCTATGAA GCCGATACTG TCTATCACTT TATCAAGTTG ATTGAAAAAT TGGGCCTTAA GCCTGTGCTT TTACCCTTTA AACCCAATGG CAAGCCGATA CATATTAAAG GCTTCCTCAG TAAATTTGCT AAGACGGCTC AGTCTTCGGC CGATTTCTTG ACACAGGTTT TTGAGCTGAA TATGCCGATG GTGGGTGTCG ATCCTGCTAT GGTGCTTTGC TACCGGGATG AATATCGTGA AGTGCTTGGG GATAGTTGTG GTGATTTTAA TGTCAAGTTG TCTAATGAAT GGCTCTTAGA GGCTATCGAA CATTGCGATA AGCTGACTGT TAATCAAGAT GCTTCAAATG AATTCACCTG GTTCAGCCAT TGTACCGAGT CAACGGCAAA ACCTAATACC GCGACAGAGT GGAAGAAGAT ATTTAACCAC TTCGGTGCAA AATTAGAGAC GGTGAGTCTG GGGTGTTGTG GCATGGCTGG TACTTATGGC CATGAAGCCG AGAATCAAGA AAGATCTCGA GAGCTATTTT CCATGTCCTG GGAGCAAACG TTAAAGTCAT TACCCAGTGA ACAGATCTTA GTGTCCGGTT ACTCTTGTCG AAGTCAGGTG AAACGTTTCG GTGGTTTTAA GCCCAGACAT CCGGTTCAGG CGTTATTGGC GCTTTTATAA
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Protein sequence | MLPIDKLPKL SHEQTLEPVY LAFLAALEQS DFTGDIDKRY SARLAQATDN SVYQFLPQAV IYPRSQKDVR LVLMLATSAE FSQVVFSARG GGTGTNGQAL THGLVLDLSR YLNKVIEINP EEAWVRVEAG VVKDALNDAL RPHGYFFSPD LSTSNRATMG GMVNTDASGA GSLVYGKTSD HVIGLSSVLY DGSVLDTYSI TPKELENIDA VTSNPLGQTL LTSIANICSD KRPLIESRFP KLNRFLTGYD LKNVWNDELT EFNLSRILTG SEGTLAVITE AKLNITPLPS VRMMVNIKYN SFESALRHAP ELVKAKATVV ETIDSKVLNL AQQDIIWHSV SELIKDVPGS VIDGLNMVEF AGEQEEVEAK VAALTSALET QIDESAGGLL GYQVTNDKKS INTIYAMRKK AVGLLGAAKG RRKPLAFAED TAVPPEKLAD FIMEFRALLD SHQLQYGMFG HVDAGVLHVR PALDMCDIDD ERLLKTVSDQ VAELTLKYGG LMWGEHGKGV RGEYGPSVFG EELYGVLEEV KGLFDPKNKL NPGKLVAPKG TGALIYNVDS VKRGSFDRQI PMETREAFPD VMNCNGNGLC FNYSAYSPMC PSFKVTGDRV QSPKGRAGLM REWLRLLESE GVDVDALAKS KPLGWLQRTQ NTLKASREYD YSHEVMESLK GCLACKACTS QCPVKVDVPK FRAQFFNIYY QRYLRPVKDY LVAGIEESLP LMAIAPRLTN AVSQNPLSQW VIKRSLGYVD APALSIPTLK QRLDGHACRG YDLEALQNIP QGERQNYVLV VQDPFNSFYE ADTVYHFIKL IEKLGLKPVL LPFKPNGKPI HIKGFLSKFA KTAQSSADFL TQVFELNMPM VGVDPAMVLC YRDEYREVLG DSCGDFNVKL SNEWLLEAIE HCDKLTVNQD ASNEFTWFSH CTESTAKPNT ATEWKKIFNH FGAKLETVSL GCCGMAGTYG HEAENQERSR ELFSMSWEQT LKSLPSEQIL VSGYSCRSQV KRFGGFKPRH PVQALLALL
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