| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1856 |
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| Symbol | |
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| ID | 5611712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2232746 |
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| End bp | 2233705 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932732 |
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| Product | TolA family protein |
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| Protein accession | YP_001473595 |
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| Protein GI | 157374995 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3064] Membrane protein involved in colicin uptake |
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| TIGRFAM ID | [TIGR02794] TolA protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0299684 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.827846 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACAGATA AAGCAAATTT TACGTTACCT CTGGTGATTT CAGCTGGCAT TCATATTGGC
GTGTTAGTTA TTCTCGCATT GGGTGTCGAT TTTTCTGAAC CCCCAAAACC TCAGCCACAG
GCGAGTGCCC CTGCTGTACA AGCCGTTGTG GTGGATCAGA AAAAAGTGGC TCAGCACGTT
GAGAGACTTA AAGCCGAAAA AAGAGAAACT GAGCGCAAGG AGAAAGCCAG ACAAGATGAT
TTAGAGCTTA AGGCGAAGGA AGCTCGCCAG GAGCGAGAGC GTGAACAGGC TCAAATTAAA
AAGCTCGAAA AACAACGTAA GCAAAAAGAG ATAGAAACGA AAAATGCCGC AGCGGCTGCA
AAGGCGGCTC AATTAAAAGA GAAGCAAGCC AAGGATAAAG CACAAAAAGC AGAAGCTGAC
AGAAAACAGA AAGAGAAAGA ACGCAAAGCC TCTGAAGTGG CAGCAAAAAA AGCCGCTGAA
AAACGTAAGC AGGAAGAAGC TGCGGCGAAA AAAGCAGCCG ATGAGCGTAA GCGTAAAGAG
GAGGCGGAAC GCAAACGTAA GGCTGAAGCC GAGCGTAAGC GCAAAGCTGA GGAGCAGGCT
CGTCAACAGC AAGAGCAGAT GATGCAAGAT GCCTTAGCTG CCGAGCAGGC CGCACTGTCT
CAGACACGTA ATAAGCAAGT AATGACTGAA GTTCAGCGTT ATACCAGCAT GATTAGGGCG
ACTATTCAGC GAAACCTTGT TGTCGATGAG TCGATGCGAG GTAAGAGCTG TCGTATATTT
ATTCGTTTAG CGAATGACGG GTTTGTCACC GCCAATAAAA TATTGTCGGG TGATCCGGTT
GTATGCCGAG CGACTAAAAC GGCGATAAAT AAAGCCGGTC GGTTGCCTGT GTCGAGTGAG
CCAGATGTTT ATAACAAATT AAAAGAGATT AATTTAACTG TTCAACCTGA ATTTAATTAA
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| Protein sequence | MTDKANFTLP LVISAGIHIG VLVILALGVD FSEPPKPQPQ ASAPAVQAVV VDQKKVAQHV
ERLKAEKRET ERKEKARQDD LELKAKEARQ EREREQAQIK KLEKQRKQKE IETKNAAAAA
KAAQLKEKQA KDKAQKAEAD RKQKEKERKA SEVAAKKAAE KRKQEEAAAK KAADERKRKE
EAERKRKAEA ERKRKAEEQA RQQQEQMMQD ALAAEQAALS QTRNKQVMTE VQRYTSMIRA
TIQRNLVVDE SMRGKSCRIF IRLANDGFVT ANKILSGDPV VCRATKTAIN KAGRLPVSSE
PDVYNKLKEI NLTVQPEFN
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